Rscript ~/code/spp/spp_package/run_spp.R -c=Sig70_exponential_aerobic_growth_no_rifampicin_applied_replicate_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Sig70_exponential_aerobic_growth_no_rifampicin_applied_replicate_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sig70_exponential_aerobic_growth_no_rifampicin_applied_replicate_1-2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Sig70_exponential_aerobic_growth_no_rifampicin_applied_replicate_1-2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sig70_exponential_aerobic_growth_no_rifampicin_applied_replicate_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Sig70_exponential_aerobic_growth_no_rifampicin_applied_replicate_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sig70_exponential_aerobic_growth_no_rifampicin_applied_replicate_2-2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Sig70_exponential_aerobic_growth_no_rifampicin_applied_replicate_2-2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sig70_exponential_aerobic_growth_rifampicin_applied_for_20_minutes_replicate_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Sig70_exponential_aerobic_growth_rifampicin_applied_for_20_minutes_replicate_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sig70_exponential_aerobic_growth_rifampicin_applied_for_20_minutes_replicate_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Sig70_exponential_aerobic_growth_rifampicin_applied_for_20_minutes_replicate_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sig70_static_aerobic_growth_no_rifampicin_applied_replicate_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Sig70_static_aerobic_growth_no_rifampicin_applied_replicate_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sig70_static_aerobic_growth_no_rifampicin_applied_replicate_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Sig70_static_aerobic_growth_no_rifampicin_applied_replicate_2.1x36mers.QC