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Rscript ~/code/spp/spp_package/run_spp.R -c=Fis_HS_i5006_DY330_rep2_20238.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Fis_HS_i5006_DY330_rep2_20238.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Fis_MHS_i5006_DY330_rep1_19780.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Fis_MHS_i5006_DY330_rep1_19780.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=HimD_HS_i5006_DY330_rep1_20227.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HimD_HS_i5006_DY330_rep1_20227.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=HimD_HS_i5006_DY330_rep3_21327.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HimD_HS_i5006_DY330_rep3_21327.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=HimD_MHS_i5006_DY330_rep1_20219.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HimD_MHS_i5006_DY330_rep1_20219.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=HimD_MHS_i5006_DY330_rep3_21320.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=HimD_MHS_i5006_DY330_rep3_21320.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MglB_HS_i5006_DY330_rep1_17259.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MglB_HS_i5006_DY330_rep1_17259.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=MglB_HS_i5006_DY330_rep2_17274.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MglB_HS_i5006_DY330_rep2_17274.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=MglB_MHS_i5006_DY330_rep2_17267.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=MglB_MHS_i5006_DY330_rep2_17267.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoA_HS_i5006_DY330_rep1_19790.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoA_HS_i5006_DY330_rep1_19790.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoA_HS_i5006_DY330_rep2_20240.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoA_HS_i5006_DY330_rep2_20240.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=RpoA_MHS_i5006_DY330_rep2_20236.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoA_MHS_i5006_DY330_rep2_20236.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=RpoB_HS_i5006_DY330_rep1_17260.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoB_HS_i5006_DY330_rep1_17260.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=RpoC_HS_i5006_DY330_rep1_20231.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoC_HS_i5006_DY330_rep1_20231.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=RpoC_HS_i5006_DY330_rep4_21324.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoC_HS_i5006_DY330_rep4_21324.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoC_MHS_i5006_DY330_rep1_20223.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoC_MHS_i5006_DY330_rep1_20223.1x36mers.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=RpoC_MHS_i5006_DY330_rep3_21316.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoC_MHS_i5006_DY330_rep3_21316.1x36mers.QC
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