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~/programs/samtools-0.1.19/samtools index L978-YAP5-0min-rep2.2x10mers.unique.bam
~/programs/samtools-0.1.19/samtools index L979-MSN2-0min-rep2.2x10mers.unique.bam
~/programs/samtools-0.1.19/samtools index L980-BDF1-0min-rep2.2x10mers.unique.bam
~/programs/samtools-0.1.19/samtools index L981-SFP1-0min-rep2.2x10mers.unique.bam
~/programs/samtools-0.1.19/samtools index L982-SKN7-0min-rep2.2x10mers.unique.bam
~/programs/samtools-0.1.19/samtools index L983-PDR3-0min-rep2.2x10mers.unique.bam
~/programs/samtools-0.1.19/samtools index L984-HOG1-0min-rep2.2x10mers.unique.bam
~/programs/samtools-0.1.19/samtools index L985-YAP3-0min-rep2.2x10mers.unique.bam
~/programs/samtools-0.1.19/samtools index L986-MSN1-0min-rep2.2x10mers.unique.bam
~/programs/samtools-0.1.19/samtools index L987-MSN4-0min-rep2.2x10mers.unique.bam
~/programs/samtools-0.1.19/samtools index L988-YAP6-0min-rep2.2x10mers.unique.bam
~/programs/samtools-0.1.19/samtools index L989-YAP1-0min-rep2.2x10mers.unique.bam
~/programs/samtools-0.1.19/samtools index L990-SMP1-0min-rep2.2x10mers.unique.bam
~/programs/samtools-0.1.19/samtools index L991-ARR1-0min-rep2.2x10mers.unique.bam
~/programs/samtools-0.1.19/samtools index L992-UME6-0min-rep2.2x10mers.unique.bam
~/programs/samtools-0.1.19/samtools index L993-PHO4-0min-rep2.2x10mers.unique.bam
~/programs/samtools-0.1.19/samtools index L994-SKO1-0min-rep2.2x10mers.unique.bam
~/programs/samtools-0.1.19/samtools index L995-YAP7-0min-rep2.2x10mers.unique.bam
~/programs/samtools-0.1.19/samtools index L996-GAT1-0min-rep2.2x10mers.unique.bam
~/programs/samtools-0.1.19/samtools index L1034-Training_camp_4-HOG1-0min-rep1-ajberg5.2x20mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L1035-Training_camp_5-YAP1-0min-rep2-annashch.2x20mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L1037-Training_camp_7-MSN2-0min-rep2-annlin.2x20mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L1040-Training_camp_10-MSN4-0min-rep2-clin5.2x20mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L1042-Training_camp_12-YAP1-0min-rep1-courtrun.2x20mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L1043-Training_camp_13-MSN1-0min-rep2-cvduffy.2x20mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L1045-Training_camp_15-WT-0min-rep1-genegra2.2x20mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L1048-Training_camp_18-SKN7-0min-rep2-jarhodes.2x20mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L1050-Training_camp_20-MSN4-0min-rep1-lstrand.2x20mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L1052-Training_camp_22-SKN7-0min-rep1-makena.2x20mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L1055-Training_camp_26-HOG1-0min-rep2-miao1.2x20mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L1061-Training_camp_32-HOT1-0min-rep2-soumyak.2x20mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L1062-Training_camp_33-WT-0min-rep2-srstern.2x20mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L1064-Training_camp_35-MSN2-0min-rep1-subkc.2x20mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L1067-Training_camp_38-YAP7-0min-rep2-surag.2x20mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L1068-Training_camp_39-YAP6-0min-rep2-zahoor.2x20mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L665-FUN30.2x20mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L666-MSS11.2x20mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L669-ARG80.2x20mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L672-CAT8.2x20mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L674-CIN5.2x20mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L704-REC8.2x20mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L713-YNR063W.2x20mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L925-MSN2-0min-rep1.2x20mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L930-YAP7-0min-rep1.2x20mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L932-SMP1-0min-rep1.2x20mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L935-ARR1-0min-rep1.2x20mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L938-PDR3-0min-rep1.2x20mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L939-GAT1-0min-rep1.2x20mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L940-SKO1-0min-rep1.2x20mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L941-CHA4-0min-rep1.2x20mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L943-ROX1-0min-rep1.2x20mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L946-GAT4-0min-rep1.2x20mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L977-GAT4-0min-rep2.2x20mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L984-HOG1-0min-rep2.2x20mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L1034-Training_camp_4-HOG1-0min-rep1-ajberg5.2x15mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L824-NHP10.2x15mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L825-SPP1.2x15mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L826-SFL1.2x15mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L827-STP3.2x15mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L829-ISW2.2x15mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L831-PHD1.2x15mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L832-SWI5.2x15mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L837-MIG1.2x15mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L838-HAP3.2x15mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L839-YHR177W.2x15mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L848-TOD6.2x15mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L925-MSN2-0min-rep1.2x15mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L927-MSN1-0min-rep1.2x15mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L928-HOG1-0min-rep1.2x15mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L929-BDF1-0min-rep1.2x15mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L931-UME6-0min-rep1.2x15mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L939-GAT1-0min-rep1.2x15mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L1034-Training_camp_4-HOG1-0min-rep1-ajberg5.2x10mers.unique.dedup.bam
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~/programs/samtools-0.1.19/samtools index L796-UME6.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L797-REI1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L798-YLR278C.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L799-SFP1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L800-ECM23.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L801-VHR1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L802-DHH1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L803-YAP6.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L804-GCN4.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L805-PDR1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L806-MIG2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L807-ADR1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L808-YPR022C.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L809-HAA1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L810-ARR1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L811-YPR013C.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L812-RGT1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L813-RFX1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L814-IXR1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L815-PDR8.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L816-ECM22.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L817-XRN1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L818-YRR1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L819-MSN2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L820-YPR196W.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L821-DAL81.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L822-HAT1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L823-PAF1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L824-NHP10.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L825-SPP1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L826-SFL1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L827-STP3.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L828-YRM1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L829-ISW2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L830-HTZ1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L831-PHD1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L832-SWI5.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L833-ACA1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L834-INO2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L835-PHO4.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L836-MGA1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L837-MIG1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L838-HAP3.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L839-YHR177W.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L847-GLN3.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L848-TOD6.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L925-MSN2-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L927-MSN1-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L928-HOG1-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L929-BDF1-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L930-YAP7-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L931-UME6-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L932-SMP1-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L933-YAP1-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L934-YAP3-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L935-ARR1-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L936-PHO4-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L937-YAP6-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L938-PDR3-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L939-GAT1-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L940-SKO1-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L941-CHA4-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L942-PHO2-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L943-ROX1-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L944-HOT1-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L945-YAP5-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L946-GAT4-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L947-SKN7-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L948-MSN4-0min-rep1.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L973-HOT1-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L974-ROX1-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L975-PHO2-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L976-CHA4-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L977-GAT4-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L978-YAP5-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L979-MSN2-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L980-BDF1-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L981-SFP1-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L982-SKN7-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L983-PDR3-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L984-HOG1-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L985-YAP3-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L986-MSN1-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L987-MSN4-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L988-YAP6-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L989-YAP1-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L990-SMP1-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L991-ARR1-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L992-UME6-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L993-PHO4-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L994-SKO1-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L995-YAP7-0min-rep2.2x10mers.unique.dedup.bam
~/programs/samtools-0.1.19/samtools index L996-GAT1-0min-rep2.2x10mers.unique.dedup.bam