export PATH=/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.17:$PATH; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.2.13.07/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/04-Amoebozoa-Tetramitus_jugosus/juicer-hifiasm.hic.p_ctg -d /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/04-Amoebozoa-Tetramitus_jugosus/juicer-hifiasm.hic.p_ctg -p /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/04-Amoebozoa-Tetramitus_jugosus/hifiasm.hic.p_ctg.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/04-Amoebozoa-Tetramitus_jugosus/hifiasm.hic.p_ctg.fa