Index of /kundaje/marinovg/oak/various/papers/2024_ToL_Hi-C/2023-07-09/04-Amoebozoa-Tetramitus_jugosus/juicer-hifiasm.hic.p_ctg-3D_DNA

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]LICENSE2023-09-26 03:05 1.0K 
[TXT]README.md2023-09-26 03:05 8.7K 
[TXT]archive.hifiasm.hic.p_ctg.edits.at.step.1.txt2023-09-26 06:34 22K 
[ ]coverage_wide.at.step.0.wig2023-09-26 05:50 26K 
[ ]coverage_wide.at.step.1.wig2023-09-26 06:34 26K 
[ ]depletion_score_narrow.at.step.0.wig2023-09-26 05:50 434K 
[ ]depletion_score_narrow.at.step.1.wig2023-09-26 06:34 446K 
[ ]depletion_score_wide.at.step.0.wig2023-09-26 05:47 22K 
[ ]depletion_score_wide.at.step.1.wig2023-09-26 06:32 22K 
[TXT]edits.for.step.1.txt2023-09-26 05:50 25K 
[TXT]edits.for.step.2.txt2023-09-26 06:34 13K 
[TXT]h.edits.txt2023-09-26 08:03 47  
[ ]hifiasm.hic.p_ctg.0.asm2023-09-26 05:23 444  
[ ]hifiasm.hic.p_ctg.0.assembly2023-09-26 05:28 3.1K 
[ ]hifiasm.hic.p_ctg.0.cprops2023-09-26 03:40 2.5K 
[ ]hifiasm.hic.p_ctg.0.hic2023-09-26 05:47 131M 
[TXT]hifiasm.hic.p_ctg.0_asm.scaffold_track.txt2023-09-26 05:28 14K 
[TXT]hifiasm.hic.p_ctg.0_asm.superscaf_track.txt2023-09-26 05:28 2.4K 
[ ]hifiasm.hic.p_ctg.1.asm2023-09-26 06:07 1.7K 
[ ]hifiasm.hic.p_ctg.1.assembly2023-09-26 06:11 18K 
[ ]hifiasm.hic.p_ctg.1.cprops2023-09-26 05:50 16K 
[ ]hifiasm.hic.p_ctg.1.hic2023-09-26 06:31 130M 
[TXT]hifiasm.hic.p_ctg.1_asm.scaffold_track.txt2023-09-26 06:11 55K 
[TXT]hifiasm.hic.p_ctg.1_asm.superscaf_track.txt2023-09-26 06:11 29K 
[ ]hifiasm.hic.p_ctg.2.asm2023-09-26 06:54 2.5K 
[ ]hifiasm.hic.p_ctg.2.assembly2023-09-26 06:58 27K 
[ ]hifiasm.hic.p_ctg.2.cprops2023-09-26 06:34 24K 
[ ]hifiasm.hic.p_ctg.2.hic2023-09-26 07:22 130M 
[TXT]hifiasm.hic.p_ctg.2_asm.scaffold_track.txt2023-09-26 06:58 81K 
[TXT]hifiasm.hic.p_ctg.2_asm.superscaf_track.txt2023-09-26 06:58 47K 
[ ]hifiasm.hic.p_ctg.FINAL.assembly2023-09-26 09:04 24K 
[ ]hifiasm.hic.p_ctg.FINAL.fasta2023-09-26 09:04 34M 
[ ]hifiasm.hic.p_ctg.FINAL.hic2023-09-26 09:32 131M 
[TXT]hifiasm.hic.p_ctg.FINAL_asm.scaffold_track.txt2023-09-26 09:13 72K 
[TXT]hifiasm.hic.p_ctg.FINAL_asm.superscaf_track.txt2023-09-26 09:13 41K 
[ ]hifiasm.hic.p_ctg.cprops2023-09-26 03:40 2.5K 
[TXT]hifiasm.hic.p_ctg.edits.txt2023-09-26 06:34 34K 
[ ]hifiasm.hic.p_ctg.final.asm2023-09-26 08:33 2.2K 
[ ]hifiasm.hic.p_ctg.final.assembly2023-09-26 08:42 23K 
[ ]hifiasm.hic.p_ctg.final.cprops2023-09-26 08:33 20K 
[ ]hifiasm.hic.p_ctg.final.fasta2023-09-26 09:04 34M 
[ ]hifiasm.hic.p_ctg.final.hic2023-09-26 09:02 131M 
[ ]hifiasm.hic.p_ctg.polished.asm2023-09-26 07:33 2.5K 
[ ]hifiasm.hic.p_ctg.polished.cprops2023-09-26 07:27 24K 
[ ]hifiasm.hic.p_ctg.polished.depletion_score_narrow.wig2023-09-26 07:27 470K 
[ ]hifiasm.hic.p_ctg.polished.depletion_score_wide.wig2023-09-26 07:23 4.6K 
[TXT]hifiasm.hic.p_ctg.polished.edits_2D.txt2023-09-26 07:27 47  
[ ]hifiasm.hic.p_ctg.polished.hic2023-09-26 08:00 130M 
[ ]hifiasm.hic.p_ctg.polished.mismatch_narrow.bed2023-09-26 07:27 402  
[ ]hifiasm.hic.p_ctg.polished.mismatch_wide.bed2023-09-26 07:23 52  
[TXT]hifiasm.hic.p_ctg.polished.mismatches_2D.txt2023-09-26 07:27 47  
[ ]hifiasm.hic.p_ctg.polished.split.assembly2023-09-26 08:13 27K 
[ ]hifiasm.hic.p_ctg.polished.split.depletion_score_narrow.wig2023-09-26 08:03 470K 
[ ]hifiasm.hic.p_ctg.polished.split.depletion_score_wide.wig2023-09-26 08:00 4.6K 
[TXT]hifiasm.hic.p_ctg.polished.split.edits_2D.txt2023-09-26 08:03 47  
[ ]hifiasm.hic.p_ctg.polished.split.mismatch_narrow.bed2023-09-26 08:03 402  
[ ]hifiasm.hic.p_ctg.polished.split.mismatch_wide.bed2023-09-26 08:00 52  
[TXT]hifiasm.hic.p_ctg.polished.split.mismatches_2D.txt2023-09-26 08:03 47  
[TXT]hifiasm.hic.p_ctg.polished.split.suspicious_2D.txt2023-09-26 08:03 47  
[TXT]hifiasm.hic.p_ctg.polished.suspect_2D.txt2023-09-26 07:27 47  
[TXT]hifiasm.hic.p_ctg.polished_asm.scaffold_track.txt2023-09-26 07:37 81K 
[TXT]hifiasm.hic.p_ctg.polished_asm.superscaf_track.txt2023-09-26 07:37 47K 
[ ]hifiasm.hic.p_ctg.rawchrom.asm2023-09-26 08:33 2.2K 
[ ]hifiasm.hic.p_ctg.rawchrom.assembly2023-09-26 08:42 23K 
[ ]hifiasm.hic.p_ctg.rawchrom.cprops2023-09-26 08:33 20K 
[ ]hifiasm.hic.p_ctg.rawchrom.fasta2023-09-26 09:04 34M 
[ ]hifiasm.hic.p_ctg.rawchrom.hic2023-09-26 09:02 131M 
[TXT]hifiasm.hic.p_ctg.rawchrom_asm.scaffold_track.txt2023-09-26 08:42 72K 
[TXT]hifiasm.hic.p_ctg.rawchrom_asm.superscaf_track.txt2023-09-26 08:42 41K 
[ ]hifiasm.hic.p_ctg.resolved.asm2023-09-26 06:54 2.5K 
[ ]hifiasm.hic.p_ctg.resolved.cprops2023-09-26 06:34 24K 
[ ]hifiasm.hic.p_ctg.resolved.hic2023-09-26 07:22 130M 
[ ]hifiasm.hic.p_ctg.resolved.polish.assembly2023-09-26 07:37 27K 
[TXT]hifiasm.hic.p_ctg.resolved_asm.scaffold_track.txt2023-09-26 06:58 81K 
[TXT]hifiasm.hic.p_ctg.resolved_asm.superscaf_track.txt2023-09-26 06:58 47K 
[ ]hifiasm.hic.p_ctg.split.asm2023-09-26 08:09 2.5K 
[ ]hifiasm.hic.p_ctg.split.assembly2023-09-26 08:33 27K 
[ ]hifiasm.hic.p_ctg.split.cprops2023-09-26 08:03 24K 
[ ]hifiasm.hic.p_ctg.split.hic2023-09-26 08:33 130M 
[TXT]hifiasm.hic.p_ctg.split_asm.scaffold_track.txt2023-09-26 08:13 81K 
[TXT]hifiasm.hic.p_ctg.split_asm.superscaf_track.txt2023-09-26 08:13 47K 
[ ]mismatch_narrow.at.step.0.bed2023-09-26 05:50 4.5K 
[ ]mismatch_narrow.at.step.1.bed2023-09-26 06:34 3.8K 
[ ]mismatch_wide.at.step.0.bed2023-09-26 05:47 320  
[ ]mismatch_wide.at.step.1.bed2023-09-26 06:32 373  
[TXT]mismatches.at.step.0.txt2023-09-26 05:50 154  
[TXT]mismatches.at.step.1.txt2023-09-26 06:34 1.1K 
[ ]repeats_wide.at.step.0.bed2023-09-26 05:50 75  
[ ]repeats_wide.at.step.1.bed2023-09-26 06:34 80  
[TXT]run-asm-pipeline-post-review.sh2023-09-26 03:05 11K 
[TXT]run-asm-pipeline.sh2023-09-26 03:05 44K 
[ ]suspect.at.step.0.bed2023-09-26 05:50 4.3K 
[ ]suspect.at.step.1.bed2023-09-26 06:34 3.5K 
[TXT]suspect_2D.at.step.0.txt2023-09-26 05:50 26K 
[TXT]suspect_2D.at.step.1.txt2023-09-26 06:34 14K 
[ ]z2023-09-26 03:05 343  
[ ]z3D-04.1.err2023-09-26 09:10 22K 
[ ]z3D-04.1.out2023-09-26 09:32 20K 
[ ]z3D-04.1.sbatch2023-09-26 03:05 556  
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