Index of /kundaje/marinovg/oak/various/papers/2024_Symbiodinium-dhmU-ATAC/2023-07-31-figures
Name
Last modified
Size
Description
Parent Directory
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ATACTSSscore.txt
2023-08-01 08:44
1.1K
DESeq2/
2023-08-02 16:19
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K562-ATAC-ENCFF512VEZ.MACS2-PE_peaks.narrowPeak.RPM
2023-08-01 08:43
4.3M
K562-ATAC-ENCFF695IGF.RPM.files
2023-08-01 07:21
122
K562-ATAC-ENCFF695IGF.RPM.table
2023-08-01 08:44
2.5M
K562-ATAC-ENCFF695IGF.bed.gz
2021-03-02 10:22
2.6M
K562-WGBS-ENCFF285UKJ.MACS2-PE_peaks.narrowPeak.RPM
2023-08-01 08:13
4.4M
L08_Symbiodinium_minutum_SSb01_omniATAC-log2C-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a.bigWig
2023-08-04 21:27
47M
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks-vs-partition-TSS-500bp-combined
2023-08-02 19:02
14M
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks-vs-partition-TSS-500bp-combined.hist
2023-08-02 19:17
53
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks.L08.RPM
2023-08-02 13:25
2.3M
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks.L503-27C-rep1.a.counts
2023-08-02 12:18
2.3M
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks.L504-27C-rep2.a.counts
2023-08-02 12:18
2.3M
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks.L505-34C-rep1.a.counts
2023-08-02 12:27
2.3M
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks.L506-34C-rep2.a.counts
2023-08-02 12:21
2.3M
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks.L511.RPM
2023-08-02 12:08
2.1M
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks.a.counts.files
2023-08-02 12:17
584
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks.a.counts.int.table
2023-08-02 16:10
2.2M
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks.a.counts.table
2023-08-02 13:28
4.5M
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks.narrowPeak
2023-08-02 11:52
9.6M
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks.xls
2023-08-02 11:52
10M
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_summits.bed
2023-08-02 11:52
8.2M
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a..MACS2_peaks.narrowPeak
2023-08-02 11:52
12M
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a..MACS2_peaks.xls
2023-08-02 11:52
12M
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a..MACS2_summits.bed
2023-08-02 11:52
10M
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks-vs-partition-TSS-500bp-combined
2023-08-02 19:14
532K
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks-vs-partition-TSS-500bp-combined.hist
2023-08-02 19:17
49
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.L08.RPM
2023-08-02 11:05
96K
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.L503-27C-rep1.a.counts
2023-08-02 12:18
84K
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.L503-27C-rep1.unique.counts
2023-08-02 12:18
76K
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.L504-27C-rep2.a.counts
2023-08-02 12:19
84K
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.L504-27C-rep2.unique.counts
2023-08-02 12:18
76K
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.L505-34C-rep1.a.counts
2023-08-02 12:19
87K
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.L505-34C-rep1.unique.counts
2023-08-02 12:19
78K
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.L506-34C-rep2.a.counts
2023-08-02 12:19
85K
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.L506-34C-rep2.unique.counts
2023-08-02 12:18
77K
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.L511.RPM
2023-08-02 11:04
96K
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.RPM.files
2023-08-02 11:05
209
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.RPM.table
2023-08-02 13:28
130K
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.a.RPM.files
2023-08-02 12:06
254
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.a.RPM.table
2023-08-02 13:28
2.9M
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.a.counts.files
2023-08-02 12:14
496
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.a.counts.table
2023-08-02 13:28
147K
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.narrowPeak
2023-08-01 08:51
348K
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.unique.counts.files
2023-08-02 12:15
516
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.unique.counts.table
2023-08-02 13:28
114K
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.xls
2023-08-01 08:51
366K
L08_Symbiodinium_minutum_SSb01_omniATAC-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_summits.bed
2023-08-01 08:51
289K
L503-27C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks-vs-partition-TSS-500bp-combined
2023-08-02 19:07
3.7M
L503-27C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks-vs-partition-TSS-500bp-combined.hist
2023-08-02 19:17
52
L503-27C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks.narrowPeak
2023-08-02 11:30
2.4M
L503-27C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks.xls
2023-08-02 11:30
2.5M
L503-27C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_summits.bed
2023-08-02 11:30
2.0M
L503-27C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a..MACS2_peaks.narrowPeak
2023-08-02 11:31
2.7M
L503-27C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a..MACS2_peaks.xls
2023-08-02 11:31
2.9M
L503-27C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a..MACS2_summits.bed
2023-08-02 11:31
2.3M
L503-27C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks-vs-partition-TSS-500bp-combined
2023-08-02 19:06
120K
L503-27C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks-vs-partition-TSS-500bp-combined.hist
2023-08-02 19:17
46
L503-27C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.narrowPeak
2023-08-01 08:39
81K
L503-27C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.xls
2023-08-01 08:39
87K
L503-27C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_summits.bed
2023-08-01 08:39
64K
L504-27C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks-vs-partition-TSS-500bp-combined
2023-08-02 19:14
4.1M
L504-27C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks-vs-partition-TSS-500bp-combined.hist
2023-08-02 19:17
52
L504-27C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks.narrowPeak
2023-08-02 11:30
2.7M
L504-27C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks.xls
2023-08-02 11:30
2.8M
L504-27C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_summits.bed
2023-08-02 11:30
2.2M
L504-27C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a..MACS2_peaks.narrowPeak
2023-08-02 11:31
3.2M
L504-27C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a..MACS2_peaks.xls
2023-08-02 11:31
3.3M
L504-27C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a..MACS2_summits.bed
2023-08-02 11:31
2.7M
L504-27C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks-vs-partition-TSS-500bp-combined
2023-08-02 19:06
156K
L504-27C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks-vs-partition-TSS-500bp-combined.hist
2023-08-02 19:17
46
L504-27C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.narrowPeak
2023-08-01 08:39
103K
L504-27C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.xls
2023-08-01 08:39
110K
L504-27C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_summits.bed
2023-08-01 08:39
81K
L505-34C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks-vs-partition-TSS-500bp-combined
2023-08-02 19:07
14M
L505-34C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks-vs-partition-TSS-500bp-combined.hist
2023-08-02 19:17
54
L505-34C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks.narrowPeak
2023-08-02 12:00
9.8M
L505-34C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks.xls
2023-08-02 12:00
10M
L505-34C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_summits.bed
2023-08-02 12:00
8.0M
L505-34C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a..MACS2_peaks.narrowPeak
2023-08-02 12:01
12M
L505-34C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a..MACS2_peaks.xls
2023-08-02 12:01
13M
L505-34C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a..MACS2_summits.bed
2023-08-02 12:01
10M
L505-34C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks-vs-partition-TSS-500bp-combined
2023-08-02 19:14
324K
L505-34C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks-vs-partition-TSS-500bp-combined.hist
2023-08-02 19:17
47
L505-34C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.narrowPeak
2023-08-01 08:48
200K
L505-34C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.xls
2023-08-01 08:48
213K
L505-34C-rep1-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_summits.bed
2023-08-01 08:48
158K
L506-34C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks-vs-partition-TSS-500bp-combined
2023-08-02 19:15
8.6M
L506-34C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks-vs-partition-TSS-500bp-combined.hist
2023-08-02 19:17
53
L506-34C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks.narrowPeak
2023-08-02 11:40
5.7M
L506-34C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_peaks.xls
2023-08-02 11:40
6.0M
L506-34C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a.MACS2_summits.bed
2023-08-02 11:40
4.7M
L506-34C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a..MACS2_peaks.narrowPeak
2023-08-02 11:41
7.1M
L506-34C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a..MACS2_peaks.xls
2023-08-02 11:41
7.4M
L506-34C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a..MACS2_summits.bed
2023-08-02 11:41
6.0M
L506-34C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks-vs-partition-TSS-500bp-combined
2023-08-02 19:14
534K
L506-34C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks-vs-partition-TSS-500bp-combined.hist
2023-08-02 19:17
50
L506-34C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.narrowPeak
2023-08-01 08:41
292K
L506-34C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_peaks.xls
2023-08-01 08:41
311K
L506-34C-rep2-vs-L511-Symbiodinium-ATAC-gDNA.MACS2_summits.bed
2023-08-01 08:41
231K
L529-dhmU-log2C-vs-L526-Input.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a.bigWig
2023-08-04 21:27
46M
L529-dhmU-log2C-vs-L527-Depleted.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a.bigWig
2023-08-04 21:27
46M
L529-dhmU-vs-L526-Input.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a.MACS2_peaks-vs-partition-TSS-500bp-combined
2023-08-02 19:14
2.9M
L529-dhmU-vs-L526-Input.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a.MACS2_peaks-vs-partition-TSS-500bp-combined.hist
2023-08-02 19:17
8
L529-dhmU-vs-L526-Input.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a.MACS2_peaks.narrowPeak
2023-08-02 12:35
2.8M
L529-dhmU-vs-L526-Input.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a.MACS2_peaks.xls
2023-08-02 12:35
2.9M
L529-dhmU-vs-L526-Input.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a.MACS2_summits.bed
2023-08-02 12:35
2.3M
SAMstats-L08_Symbiodinium_minutum_SSb01_omniATAC.2x36mers.symbB.v1.0.a
2023-08-01 17:00
163
SAMstats-L08_Symbiodinium_minutum_SSb01_omniATAC.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a
2023-08-01 21:58
163
SAMstats-L503-27C-rep1.2x36mers.symbB.v1.0.a
2023-08-01 14:26
161
SAMstats-L503-27C-rep1.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a
2023-08-01 19:34
161
SAMstats-L504-27C-rep2.2x36mers.symbB.v1.0.a
2023-08-01 14:28
161
SAMstats-L504-27C-rep2.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a
2023-08-01 19:38
161
SAMstats-L505-34C-rep1.2x36mers.symbB.v1.0.a
2023-08-01 18:21
163
SAMstats-L505-34C-rep1.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a
2023-08-01 23:28
163
SAMstats-L506-34C-rep2.2x36mers.symbB.v1.0.a
2023-08-01 15:35
162
SAMstats-L506-34C-rep2.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a
2023-08-01 20:47
162
SAMstats-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.a
2023-08-01 14:31
161
SAMstats-L511-Symbiodinium-ATAC-gDNA.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a
2023-08-01 19:40
161
SAMstats-L526-Input.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a
2023-08-01 19:53
161
SAMstats-L527-Depleted.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a
2023-08-01 19:44
161
SAMstats-L528-IgG.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a
2023-08-01 19:02
159
SAMstats-L529-dhmU.2x36mers.symbB.v1.0.genome.FINAL.merge_debris_50kb.a
2023-08-01 19:45
161
fixWig.py
2023-08-03 09:39
1.0K
regionIntersection-combinedOuput.files
2023-08-02 19:18
1.5K
regionIntersection-combinedOuput.table
2023-08-02 19:19
524
z
2023-08-04 21:21
5.4K
z.fixed.chrom.sizes
2023-08-03 09:41
4.0K
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