Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-L1900-L1901-L1902-L1903-dm6 -d /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-L1900-L1901-L1902-L1903-dm6 -p /oak/stanford/groups/akundaje/marinovg/genomes/dm6/dm6.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/dm6/bwa-indexes/dm6_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/dm6/bwa-indexes/dm6.fa                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  987,647,388
 Normal Paired: 847,343,757 (85.79%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 140,303,631 (14.21%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 847,343,757 (85.79%)
WARN [2024-04-22T17:42:16,376]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 264,847,784 (26.82%)
PCR Duplicates: 550,442,826 (55.73%)
Optical Duplicates: 32,053,147 (3.25%)
Library Complexity Estimate: 280,094,366
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 100,141,098 (10.14% / 37.81%)
Hi-C Contacts: 164,706,686 (16.68% / 62.19%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 24% - 25% - 26% - 25%
Inter-chromosomal: 1,148,621  (0.12% / 0.43%)
Intra-chromosomal: 163,558,065  (16.56% / 61.76%)
Short Range (<20Kb): 162,422,156  (16.45% / 61.33%)
Long Range (>20Kb): 1,122,077  (0.11% / 0.42%)