Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-L1900-L1901-L1902-L1903-dm3 -d /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-L1900-L1901-L1902-L1903-dm3 -p /oak/stanford/groups/akundaje/marinovg/genomes/dm3/dm3.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/dm3/bwa-indexes/dm3_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/dm3/bwa-indexes/dm3.fa                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  987,647,388
 Normal Paired: 855,220,095 (86.59%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 132,427,293 (13.41%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 855,220,095 (86.59%)
WARN [2024-04-23T00:19:13,005]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 296,231,648 (29.99%)
PCR Duplicates: 527,060,282 (53.37%)
Optical Duplicates: 31,928,165 (3.23%)
Library Complexity Estimate: 320,901,250
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 131,935,456 (13.36% / 44.54%)
Hi-C Contacts: 164,296,192 (16.64% / 55.46%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 24% - 25% - 26% - 25%
Inter-chromosomal: 1,136,737  (0.12% / 0.38%)
Intra-chromosomal: 163,159,455  (16.52% / 55.08%)
Short Range (<20Kb): 162,042,313  (16.41% / 54.70%)
Long Range (>20Kb): 1,104,087  (0.11% / 0.37%)