Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-L1900-L1901-L1902-L1903-dm3 -d /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-L1900-L1901-L1902-L1903-dm3 -p /oak/stanford/groups/akundaje/marinovg/genomes/dm3/dm3.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/dm3/bwa-indexes/dm3_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/dm3/bwa-indexes/dm3.fa                                                                                                                                                                                                                                                                                                                                                                                                                                         
Sequenced Read Pairs:  987,647,388
 Normal Paired: 855,220,095 (86.59%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 132,427,293 (13.41%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 855,220,095 (86.59%)
WARN [2024-04-23T00:19:13,005]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 296,231,648 (29.99%)
PCR Duplicates: 527,060,282 (53.37%)
Optical Duplicates: 31,928,165 (3.23%)
Library Complexity Estimate: 320,901,250
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 128,951,118 (13.06% / 43.53%)
Hi-C Contacts: 167,280,530 (16.94% / 56.47%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 24% - 24% - 26% - 25%
Inter-chromosomal: 1,319,338  (0.13% / 0.45%)
Intra-chromosomal: 165,961,192  (16.80% / 56.02%)
Short Range (<20Kb): 164,763,084  (16.68% / 55.62%)
Long Range (>20Kb): 1,184,453  (0.12% / 0.40%)