Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-GM12878-SMC1A-ChIA-PET-ENCSR764VXA -d /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-GM12878-SMC1A-ChIA-PET-ENCSR764VXA -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  356,152,208
 Normal Paired: 206,720,545 (58.04%)
 Chimeric Paired: 116,735,784 (32.78%)
 Chimeric Ambiguous: 28,018,345 (7.87%)
 Unmapped: 4,677,534 (1.31%)
 Ligation Motif Present: 63,941 (0.02%)
Alignable (Normal+Chimeric Paired): 323,456,329 (90.82%)
Unique Reads: 195,114,537 (54.78%)
PCR Duplicates: 127,492,683 (35.80%)
Optical Duplicates: 849,109 (0.24%)
Library Complexity Estimate: 291,490,568
Intra-fragment Reads: 63,661,935 (17.87% / 32.63%)
Below MAPQ Threshold: 12,298,618 (3.45% / 6.30%)
Hi-C Contacts: 119,153,984 (33.46% / 61.07%)
 Ligation Motif Present: 31,567  (0.01% / 0.02%)
 3' Bias (Long Range): 49% - 51%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 13,816,873  (3.88% / 7.08%)
Intra-chromosomal: 105,337,111  (29.58% / 53.99%)
Short Range (<20Kb): 63,057,838  (17.71% / 32.32%)
Long Range (>20Kb): 42,279,204  (11.87% / 21.67%)