Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-GM12878-Rad21-ChIA-PET-ENCSR752QCX -d /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-GM12878-Rad21-ChIA-PET-ENCSR752QCX -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  589,341,208
 Normal Paired: 2,953,239 (0.50%)
 Chimeric Paired: 3,143 (0.00%)
 Chimeric Ambiguous: 450,850,497 (76.50%)
 Unmapped: 135,534,328 (23.00%)
 Ligation Motif Present: 43,006 (0.01%)
Alignable (Normal+Chimeric Paired): 2,956,382 (0.50%)
Unique Reads: 1,503,917 (0.26%)
PCR Duplicates: 1,447,756 (0.25%)
Optical Duplicates: 4,709 (0.00%)
Library Complexity Estimate: 1,912,601
Intra-fragment Reads: 956,888 (0.16% / 63.63%)
Below MAPQ Threshold: 226,971 (0.04% / 15.09%)
Hi-C Contacts: 320,058 (0.05% / 21.28%)
 Ligation Motif Present: 108  (0.00% / 0.01%)
 3' Bias (Long Range): 55% - 45%
 Pair Type %(L-I-O-R): 23% - 25% - 26% - 26%
Inter-chromosomal: 19,924  (0.00% / 1.32%)
Intra-chromosomal: 300,134  (0.05% / 19.96%)
Short Range (<20Kb): 297,201  (0.05% / 19.76%)
Long Range (>20Kb): 2,926  (0.00% / 0.19%)