Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-GM12878-RAD21-ChIA-PET-ENCSR355CTR -d /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-GM12878-RAD21-ChIA-PET-ENCSR355CTR -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  459,140,632
 Normal Paired: 357,529,938 (77.87%)
 Chimeric Paired: 68,702,220 (14.96%)
 Chimeric Ambiguous: 24,391,450 (5.31%)
 Unmapped: 8,517,024 (1.85%)
 Ligation Motif Present: 80,135 (0.02%)
Alignable (Normal+Chimeric Paired): 426,232,158 (92.83%)
Unique Reads: 200,052,109 (43.57%)
PCR Duplicates: 224,244,523 (48.84%)
Optical Duplicates: 1,935,526 (0.42%)
Library Complexity Estimate: 241,937,302
Intra-fragment Reads: 98,592,778 (21.47% / 49.28%)
Below MAPQ Threshold: 19,015,121 (4.14% / 9.51%)
Hi-C Contacts: 82,444,210 (17.96% / 41.21%)
 Ligation Motif Present: 29,738  (0.01% / 0.01%)
 3' Bias (Long Range): 49% - 51%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 2,330,485  (0.51% / 1.16%)
Intra-chromosomal: 80,113,725  (17.45% / 40.05%)
Short Range (<20Kb): 65,512,380  (14.27% / 32.75%)
Long Range (>20Kb): 14,601,298  (3.18% / 7.30%)