Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-GM12878-CTCF-ChIA-PET-ENCSR184YZV -d /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-GM12878-CTCF-ChIA-PET-ENCSR184YZV -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  698,958,781
 Normal Paired: 430,560,690 (61.60%)
 Chimeric Paired: 185,814,074 (26.58%)
 Chimeric Ambiguous: 67,291,331 (9.63%)
 Unmapped: 15,292,686 (2.19%)
 Ligation Motif Present: 121,900 (0.02%)
Alignable (Normal+Chimeric Paired): 616,374,764 (88.18%)
Unique Reads: 216,228,910 (30.94%)
PCR Duplicates: 397,827,611 (56.92%)
Optical Duplicates: 2,318,243 (0.33%)
Library Complexity Estimate: 232,908,247
Intra-fragment Reads: 77,138,540 (11.04% / 35.67%)
Below MAPQ Threshold: 16,672,037 (2.39% / 7.71%)
Hi-C Contacts: 122,418,333 (17.51% / 56.62%)
 Ligation Motif Present: 33,849  (0.00% / 0.02%)
 3' Bias (Long Range): 49% - 51%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 14,673,379  (2.10% / 6.79%)
Intra-chromosomal: 107,744,954  (15.42% / 49.83%)
Short Range (<20Kb): 65,729,149  (9.40% / 30.40%)
Long Range (>20Kb): 42,015,723  (6.01% / 19.43%)