File	GM12878_HiKAS_10M_Merge_HiC_Explorer.h5		
Sequenced reads	513627084		
Min rest. site distance	300		
Max library insert size	1000		

#	count	(percentage w.r.t. total sequenced reads)
Pairs mappable, unique and high quality	391856521	(76.29)
Hi-C contacts	7963164	(1.55)
One mate unmapped	21158380	(4.12)
One mate not unique	59841028	(11.65)
Low mapping quality	40771155	(7.94)

#	count	(percentage w.r.t. mappable, unique and high quality pairs)
dangling end GATC	78175996	(19.95)
self ligation (removed)	75009486	(19.14)
One mate not close to rest site	0	(0.00)
same fragment	170003494	(43.38)
self circle	2532589	(0.65)
duplicated pairs	60704381	(15.49)

#	count	(percentage w.r.t. total valid pairs used)
inter chromosomal	2804744	(35.22)
Intra short range (< 20kb)	3774177	(47.40)
Intra long range (>= 20kb)	1384243	(17.38)
Read pair type: inward pairs	507713	(6.38)
Read pair type: outward pairs	3553717	(44.63)
Read pair type: left pairs	554744	(6.97)
Read pair type: right pairs	542246	(6.81)