Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2020-12-18-NextSeq-run/juicer-L1971-L1972-L1973-L11974-GM12878_HiKAS_10M -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2020-12-18-NextSeq-run/juicer-L1971-L1972-L1973-L11974-GM12878_HiKAS_10M -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  513,627,084
 Normal Paired: 491,278,141 (95.65%)
 Chimeric Paired: 1,180,233 (0.23%)
 Chimeric Ambiguous: 890,694 (0.17%)
 Unmapped: 20,278,016 (3.95%)
 Ligation Motif Present: 2,973,512 (0.58%)
Alignable (Normal+Chimeric Paired): 492,458,374 (95.88%)
Unique Reads: 363,865,685 (70.84%)
PCR Duplicates: 128,210,923 (24.96%)
Optical Duplicates: 381,766 (0.07%)
Library Complexity Estimate: 771,949,257
Intra-fragment Reads: 188,072,714 (36.62% / 51.69%)
Below MAPQ Threshold: 42,081,288 (8.19% / 11.57%)
Hi-C Contacts: 133,711,683 (26.03% / 36.75%)
 Ligation Motif Present: 1,597,851  (0.31% / 0.44%)
 3' Bias (Long Range): 28% - 72%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 4,481,141  (0.87% / 1.23%)
Intra-chromosomal: 129,230,542  (25.16% / 35.52%)
Short Range (<20Kb): 127,523,651  (24.83% / 35.05%)
Long Range (>20Kb): 1,706,601  (0.33% / 0.47%)