Index of /kundaje/marinovg/oak/various/papers/2024_Euplotes_genome/2019-11-29-NextSeq-run/SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]before_rr.fasta2019-12-01 21:55 365M 
[ ]dataset.info2019-12-01 17:40 98  
[ ]hard_filtered_transcripts.GC2019-12-01 22:51 5.9M 
[ ]hard_filtered_transcripts.N50N902019-12-01 22:50 17  
[ ]hard_filtered_transcripts.chrom.sizes2019-12-01 22:51 4.6M 
[ ]hard_filtered_transcripts.fasta2019-12-01 21:55 63M 
[ ]hard_filtered_transcripts.min60aa_Euplotid_ORF.6frame.PFam32-A.tab2019-12-02 03:55 23M 
[ ]hard_filtered_transcripts.min60aa_Euplotid_ORF.6frame.PFam32-A.tblout.max_E_1e-5.tab2019-12-02 03:57 4.4M 
[ ]hard_filtered_transcripts.min60aa_Euplotid_ORF.6frame.PFam32-A.tblout.tab2019-12-02 03:55 21M 
[ ]hard_filtered_transcripts.min60aa_Euplotid_ORF.6frame.faa2019-12-01 22:54 61M 
[ ]hard_filtered_transcripts.min60aa_Euplotid_ORF.6frame.gtf2019-12-01 22:54 18M 
[ ]hard_filtered_transcripts.min60aa_Euplotid_ORF.PFam32-A.tab2019-12-02 03:55 14M 
[ ]hard_filtered_transcripts.min60aa_Euplotid_ORF.PFam32-A.tblout.max_E_1e-5.tab2019-12-02 03:57 3.1M 
[ ]hard_filtered_transcripts.min60aa_Euplotid_ORF.PFam32-A.tblout.tab2019-12-02 03:55 12M 
[ ]hard_filtered_transcripts.min60aa_Euplotid_ORF.faa2019-12-01 22:54 23M 
[ ]hard_filtered_transcripts.min60aa_Euplotid_ORF.gtf2019-12-01 22:54 18M 
[ ]hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.PFam32-A.tab2019-12-02 03:55 23M 
[ ]hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.PFam32-A.tblout.max_E_1e-5.tab2019-12-02 03:57 4.6M 
[ ]hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.PFam32-A.tblout.tab2019-12-02 03:55 20M 
[ ]hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.faa2019-12-01 22:54 58M 
[ ]hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.gtf2019-12-01 22:54 13M 
[ ]hard_filtered_transcripts.min60aa_standardCode_ORF.PFam32-A.tab2019-12-02 03:55 14M 
[ ]hard_filtered_transcripts.min60aa_standardCode_ORF.PFam32-A.tblout.max_E_1e-5.tab2019-12-02 03:57 3.2M 
[ ]hard_filtered_transcripts.min60aa_standardCode_ORF.PFam32-A.tblout.tab2019-12-02 03:55 12M 
[ ]hard_filtered_transcripts.min60aa_standardCode_ORF.faa2019-12-01 22:54 16M 
[ ]hard_filtered_transcripts.min60aa_standardCode_ORF.gtf2019-12-01 22:54 13M 
[ ]input_dataset.yaml2019-12-01 11:11 1.2K 
[TXT]params.txt2019-12-01 11:11 3.9K 
[ ]soft_filtered_transcripts.GC2019-12-01 22:51 21M 
[ ]soft_filtered_transcripts.N50N902019-12-01 22:50 16  
[ ]soft_filtered_transcripts.chrom.sizes2019-12-01 22:51 17M 
[ ]soft_filtered_transcripts.fasta2019-12-01 21:55 104M 
[ ]soft_filtered_transcripts.min60aa_Euplotid_ORF.6frame.PFam32-A.tab2019-12-02 03:55 23M 
[ ]soft_filtered_transcripts.min60aa_Euplotid_ORF.6frame.PFam32-A.tblout.max_E_1e-5.tab2019-12-02 03:57 4.4M 
[ ]soft_filtered_transcripts.min60aa_Euplotid_ORF.6frame.PFam32-A.tblout.tab2019-12-02 03:55 21M 
[ ]soft_filtered_transcripts.min60aa_Euplotid_ORF.6frame.faa2019-12-01 22:54 61M 
[ ]soft_filtered_transcripts.min60aa_Euplotid_ORF.6frame.gtf2019-12-01 22:54 18M 
[ ]soft_filtered_transcripts.min60aa_Euplotid_ORF.PFam32-A.tab2019-12-02 03:55 14M 
[ ]soft_filtered_transcripts.min60aa_Euplotid_ORF.PFam32-A.tblout.max_E_1e-5.tab2019-12-02 03:57 3.1M 
[ ]soft_filtered_transcripts.min60aa_Euplotid_ORF.PFam32-A.tblout.tab2019-12-02 03:55 12M 
[ ]soft_filtered_transcripts.min60aa_Euplotid_ORF.faa2019-12-01 22:54 23M 
[ ]soft_filtered_transcripts.min60aa_Euplotid_ORF.gtf2019-12-01 22:54 18M 
[ ]soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.PFam32-A.tab2019-12-02 03:55 23M 
[ ]soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.PFam32-A.tblout.max_E_1e-5.tab2019-12-02 03:57 4.6M 
[ ]soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.PFam32-A.tblout.tab2019-12-02 03:55 21M 
[ ]soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.faa2019-12-01 22:54 58M 
[ ]soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.gtf2019-12-01 22:54 13M 
[ ]soft_filtered_transcripts.min60aa_standardCode_ORF.PFam32-A.tab2019-12-02 03:55 14M 
[ ]soft_filtered_transcripts.min60aa_standardCode_ORF.PFam32-A.tblout.max_E_1e-5.tab2019-12-02 03:57 3.2M 
[ ]soft_filtered_transcripts.min60aa_standardCode_ORF.PFam32-A.tblout.tab2019-12-02 03:55 12M 
[ ]soft_filtered_transcripts.min60aa_standardCode_ORF.faa2019-12-01 22:54 16M 
[ ]soft_filtered_transcripts.min60aa_standardCode_ORF.gtf2019-12-01 22:54 13M 
[ ]spades.log2019-12-01 21:57 213K 
[ ]transcripts.1.ebwt2024-05-12 23:00 31M 
[ ]transcripts.2.ebwt2024-05-12 23:00 8.2M 
[ ]transcripts.3.ebwt2024-05-12 22:59 1.3M 
[ ]transcripts.4.ebwt2024-05-12 22:59 16M 
[ ]transcripts.GC2019-12-01 22:51 9.1M 
[ ]transcripts.GC.max452019-12-02 03:58 4.2M 
[ ]transcripts.GC.min452019-12-02 03:58 4.9M 
[ ]transcripts.N50N902019-12-01 22:50 16  
[ ]transcripts.chrom.sizes2019-12-01 22:51 7.1M 
[ ]transcripts.fasta2019-12-01 21:55 73M 
[ ]transcripts.fasta.fai2024-05-12 23:07 9.2M 
[ ]transcripts.max45_GC.chrom.sizes2024-04-01 23:14 3.3M 
[ ]transcripts.max45_GC.fasta2024-04-01 23:13 37M 
[ ]transcripts.min45_GC.chrom.sizes2024-04-01 23:14 3.8M 
[ ]transcripts.min45_GC.fasta2024-04-01 23:13 37M 
[ ]transcripts.min60aa_Euplotid_ORF.6frame.GC_max45.genes2019-12-02 03:59 4.7M 
[ ]transcripts.min60aa_Euplotid_ORF.6frame.GC_max45.genes.hist2024-04-02 00:14 1.1M 
[ ]transcripts.min60aa_Euplotid_ORF.6frame.GC_max45.gtf2019-12-02 03:58 7.8M 
[ ]transcripts.min60aa_Euplotid_ORF.6frame.GC_min45.genes2019-12-02 03:59 6.3M 
[ ]transcripts.min60aa_Euplotid_ORF.6frame.GC_min45.gtf2019-12-02 03:58 10M 
[ ]transcripts.min60aa_Euplotid_ORF.6frame.PFam32-A.GC_max45.tab2019-12-02 03:59 8.7M 
[ ]transcripts.min60aa_Euplotid_ORF.6frame.PFam32-A.tab2019-12-02 03:55 23M 
[ ]transcripts.min60aa_Euplotid_ORF.6frame.PFam32-A.tblout.GC_max45.tab2019-12-02 03:59 7.2M 
[ ]transcripts.min60aa_Euplotid_ORF.6frame.PFam32-A.tblout.max_E_1e-5.GC_max45.tab2019-12-02 03:59 1.6M 
[ ]transcripts.min60aa_Euplotid_ORF.6frame.PFam32-A.tblout.max_E_1e-5.GC_max45.tab.hist2019-12-02 03:59 90K 
[ ]transcripts.min60aa_Euplotid_ORF.6frame.PFam32-A.tblout.max_E_1e-5.tab2019-12-02 03:57 4.3M 
[ ]transcripts.min60aa_Euplotid_ORF.6frame.PFam32-A.tblout.tab2019-12-02 03:55 21M 
[ ]transcripts.min60aa_Euplotid_ORF.6frame.faa2019-12-01 22:54 61M 
[ ]transcripts.min60aa_Euplotid_ORF.6frame.gtf2019-12-01 22:54 18M 
[ ]transcripts.min60aa_Euplotid_ORF.GC_max45.genes2019-12-02 03:59 4.7M 
[ ]transcripts.min60aa_Euplotid_ORF.GC_max45.gtf2019-12-02 03:58 7.8M 
[ ]transcripts.min60aa_Euplotid_ORF.GC_min45.genes2019-12-02 03:59 6.3M 
[ ]transcripts.min60aa_Euplotid_ORF.GC_min45.gtf2019-12-02 03:58 10M 
[ ]transcripts.min60aa_Euplotid_ORF.PFam32-A.GC_max45.tab2019-12-02 03:59 8.7M 
[ ]transcripts.min60aa_Euplotid_ORF.PFam32-A.tab2019-12-02 03:55 14M 
[ ]transcripts.min60aa_Euplotid_ORF.PFam32-A.tblout.GC_max45.tab2019-12-02 03:59 7.2M 
[ ]transcripts.min60aa_Euplotid_ORF.PFam32-A.tblout.max_E_1e-5.GC_max45.tab2019-12-02 03:59 1.6M 
[ ]transcripts.min60aa_Euplotid_ORF.PFam32-A.tblout.max_E_1e-5.tab2019-12-02 03:57 3.1M 
[ ]transcripts.min60aa_Euplotid_ORF.PFam32-A.tblout.tab2019-12-02 03:55 12M 
[ ]transcripts.min60aa_Euplotid_ORF.faa2019-12-01 22:54 23M 
[ ]transcripts.min60aa_Euplotid_ORF.gtf2019-12-01 22:54 18M 
[ ]transcripts.min60aa_standardCode_ORF.6frame.GC_max45.genes2019-12-02 03:59 3.0M 
[ ]transcripts.min60aa_standardCode_ORF.6frame.GC_max45.gtf2019-12-02 03:58 5.1M 
[ ]transcripts.min60aa_standardCode_ORF.6frame.GC_min45.genes2019-12-02 03:59 5.0M 
[ ]transcripts.min60aa_standardCode_ORF.6frame.GC_min45.genes.hist2024-04-02 00:14 1.1M 
[ ]transcripts.min60aa_standardCode_ORF.6frame.GC_min45.gtf2019-12-02 03:58 8.3M 
[ ]transcripts.min60aa_standardCode_ORF.6frame.PFam32-A.GC_min45.tab2019-12-02 03:59 6.7M 
[ ]transcripts.min60aa_standardCode_ORF.6frame.PFam32-A.tab2019-12-02 03:55 23M 
[ ]transcripts.min60aa_standardCode_ORF.6frame.PFam32-A.tblout.GC_min45.tab2019-12-02 03:59 5.4M 
[ ]transcripts.min60aa_standardCode_ORF.6frame.PFam32-A.tblout.max_E_1e-5.GC_min45.tab2019-12-02 03:59 1.6M 
[ ]transcripts.min60aa_standardCode_ORF.6frame.PFam32-A.tblout.max_E_1e-5.GC_min45.tab.hist2019-12-02 03:59 95K 
[ ]transcripts.min60aa_standardCode_ORF.6frame.PFam32-A.tblout.max_E_1e-5.tab2019-12-02 03:57 4.6M 
[ ]transcripts.min60aa_standardCode_ORF.6frame.PFam32-A.tblout.tab2019-12-02 03:55 21M 
[ ]transcripts.min60aa_standardCode_ORF.6frame.faa2019-12-01 22:54 58M 
[ ]transcripts.min60aa_standardCode_ORF.6frame.gtf2019-12-01 22:54 13M 
[ ]transcripts.min60aa_standardCode_ORF.GC_max45.genes2019-12-02 03:59 3.0M 
[ ]transcripts.min60aa_standardCode_ORF.GC_max45.gtf2019-12-02 03:58 5.1M 
[ ]transcripts.min60aa_standardCode_ORF.GC_min45.genes2019-12-02 03:59 5.0M 
[ ]transcripts.min60aa_standardCode_ORF.GC_min45.gtf2019-12-02 03:58 8.3M 
[ ]transcripts.min60aa_standardCode_ORF.PFam32-A.GC_min45.tab2019-12-02 03:59 6.7M 
[ ]transcripts.min60aa_standardCode_ORF.PFam32-A.tab2019-12-02 03:55 14M 
[ ]transcripts.min60aa_standardCode_ORF.PFam32-A.tblout.GC_min45.tab2019-12-02 03:59 5.4M 
[ ]transcripts.min60aa_standardCode_ORF.PFam32-A.tblout.max_E_1e-5.GC_min45.tab2019-12-02 03:59 1.6M 
[ ]transcripts.min60aa_standardCode_ORF.PFam32-A.tblout.max_E_1e-5.tab2019-12-02 03:57 3.2M 
[ ]transcripts.min60aa_standardCode_ORF.PFam32-A.tblout.tab2019-12-02 03:55 12M 
[ ]transcripts.min60aa_standardCode_ORF.faa2019-12-01 22:54 16M 
[ ]transcripts.min60aa_standardCode_ORF.gtf2019-12-01 22:54 13M 
[ ]transcripts.paths2019-12-01 21:55 19M 
[ ]transcripts.rev.1.ebwt2024-05-12 23:00 31M 
[ ]transcripts.rev.2.ebwt2024-05-12 23:00 8.2M 
[ ]z2024-04-02 00:13 1.1M 
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