## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[S2_tandem_R1.trimgalore.bwameth.dm6.bam] OUTPUT=S2_tandem_R1.trimgalore.bwameth.dm6.dedup.bam METRICS_FILE=S2_tandem_R1.trimgalore.bwameth.dm6.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Feb 21 01:59:59 PST 2023

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
	0	61100079	0	0	2593579	0	0.042448	699190111

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.916322
3.0	2.755969
4.0	3.525357
5.0	4.230364
6.0	4.876377
7.0	5.468334
8.0	6.010757
9.0	6.507792
10.0	6.963236
11.0	7.38057
12.0	7.762982
13.0	8.113395
14.0	8.434486
15.0	8.728709
16.0	8.998312
17.0	9.245356
18.0	9.471727
19.0	9.679156
20.0	9.869229
21.0	10.043396
22.0	10.202989
23.0	10.349228
24.0	10.483231
25.0	10.60602
26.0	10.718534
27.0	10.821634
28.0	10.916106
29.0	11.002673
30.0	11.081997
31.0	11.154683
32.0	11.221287
33.0	11.282317
34.0	11.338241
35.0	11.389485
36.0	11.436441
37.0	11.479468
38.0	11.518894
39.0	11.555022
40.0	11.588126
41.0	11.61846
42.0	11.646256
43.0	11.671726
44.0	11.695065
45.0	11.716451
46.0	11.736047
47.0	11.754004
48.0	11.770458
49.0	11.785535
50.0	11.799351
51.0	11.81201
52.0	11.82361
53.0	11.83424
54.0	11.84398
55.0	11.852905
56.0	11.861083
57.0	11.868577
58.0	11.875444
59.0	11.881736
60.0	11.887502
61.0	11.892785
62.0	11.897626
63.0	11.902062
64.0	11.906127
65.0	11.909852
66.0	11.913265
67.0	11.916392
68.0	11.919258
69.0	11.921884
70.0	11.92429
71.0	11.926495
72.0	11.928515
73.0	11.930367
74.0	11.932063
75.0	11.933618
76.0	11.935042
77.0	11.936347
78.0	11.937543
79.0	11.938639
80.0	11.939643
81.0	11.940563
82.0	11.941407
83.0	11.942179
84.0	11.942887
85.0	11.943536
86.0	11.94413
87.0	11.944675
88.0	11.945174
89.0	11.945632
90.0	11.946051
91.0	11.946435
92.0	11.946787
93.0	11.947109
94.0	11.947404
95.0	11.947675
96.0	11.947923
97.0	11.948151
98.0	11.948359
99.0	11.94855
100.0	11.948725