## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[OSC_tandem_R1.trimgalore.bwameth.dm6.bam] OUTPUT=OSC_tandem_R1.trimgalore.bwameth.dm6.dedup.bam METRICS_FILE=OSC_tandem_R1.trimgalore.bwameth.dm6.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Feb 21 01:59:59 PST 2023

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
	0	58990608	0	0	5463369	0	0.092614	298491861

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.820674
3.0	2.494181
4.0	3.04691
5.0	3.500521
6.0	3.872788
7.0	4.178298
8.0	4.429022
9.0	4.634785
10.0	4.803649
11.0	4.942232
12.0	5.055963
13.0	5.149299
14.0	5.225898
15.0	5.288761
16.0	5.34035
17.0	5.382689
18.0	5.417435
19.0	5.44595
20.0	5.469351
21.0	5.488557
22.0	5.504318
23.0	5.517253
24.0	5.527868
25.0	5.536579
26.0	5.543729
27.0	5.549596
28.0	5.554411
29.0	5.558363
30.0	5.561606
31.0	5.564268
32.0	5.566452
33.0	5.568244
34.0	5.569716
35.0	5.570923
36.0	5.571914
37.0	5.572727
38.0	5.573394
39.0	5.573942
40.0	5.574391
41.0	5.57476
42.0	5.575063
43.0	5.575311
44.0	5.575515
45.0	5.575682
46.0	5.57582
47.0	5.575932
48.0	5.576025
49.0	5.576101
50.0	5.576163
51.0	5.576214
52.0	5.576256
53.0	5.57629
54.0	5.576319
55.0	5.576342
56.0	5.576361
57.0	5.576376
58.0	5.576389
59.0	5.5764
60.0	5.576408
61.0	5.576416
62.0	5.576421
63.0	5.576426
64.0	5.57643
65.0	5.576433
66.0	5.576436
67.0	5.576438
68.0	5.57644
69.0	5.576441
70.0	5.576442
71.0	5.576443
72.0	5.576444
73.0	5.576445
74.0	5.576445
75.0	5.576446
76.0	5.576446
77.0	5.576447
78.0	5.576447
79.0	5.576447
80.0	5.576447
81.0	5.576447
82.0	5.576447
83.0	5.576448
84.0	5.576448
85.0	5.576448
86.0	5.576448
87.0	5.576448
88.0	5.576448
89.0	5.576448
90.0	5.576448
91.0	5.576448
92.0	5.576448
93.0	5.576448
94.0	5.576448
95.0	5.576448
96.0	5.576448
97.0	5.576448
98.0	5.576448
99.0	5.576448
100.0	5.576448