##    0	-
##    1	29
##    2	28
##    3	27
##    4	26
##    5	25
##    6	24
##    7	23
##    8	-
##    9	-
##    10	-
##    11	22
##    12	-
##    13	-
##    14	21
##    15	20
##    16	19
##    17	-
##    18	18
##    19	17
##    20	16
##    21	15
##    22	-
##    23	-
##    24	-
##    25	14
##    26	13
##    27	12
##    28	11
##    29	10
##    30	9
##    31	8
##    32	7
##    33	-
##    34	6
##    35	5
##    36	4
##    37	-
##    38	3
##    39	2
##    40	-
##    41	1
##    -	0
#comparison	final_score	1-bp_shuffle_mean	1-bp_shuffle_std	1-bp_shuffle_p-val	3-bp_shuffle_mean	3-bp_shuffle_std	3-bp_shuffle_p-val
motif-alignments-all-vs-all/ZNF404/ZNF404-201-vs-ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_0.n_1776.PWM.trim_0.5.alignment	9.092519582881497	9.43952231965776	0.24268906756816178	0.07638372017085049	9.45202322465058	0.21697073625011495	0.04876759705622502