fasta_file: /oak/stanford/groups/akundaje/marinovg/genomes/hg19/sequence/hg19.fa
task_specs:
  task1:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HepG2-RFX1-human-ENCSR928API-Rep2.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HepG2-RFX1-human-ENCSR928API-Rep2.unique.abs_minus.bigWig
    peaks: hg19-peak-files/HepG2-RFX1-human-ENCSR928API-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task2:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HepG2-RFX1-human-ENCSR928API-Rep3.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HepG2-RFX1-human-ENCSR928API-Rep3.unique.abs_minus.bigWig
    peaks: hg19-peak-files/HepG2-RFX1-human-ENCSR928API-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task3:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-RFX1-human-ENCSR041AXL-Rep1.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-RFX1-human-ENCSR041AXL-Rep1.unique.abs_minus.bigWig
    peaks: hg19-peak-files/K562-RFX1-human-ENCSR041AXL-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task4:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-RFX1-human-ENCSR041AXL-Rep2.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-RFX1-human-ENCSR041AXL-Rep2.unique.abs_minus.bigWig
    peaks: hg19-peak-files/K562-RFX1-human-ENCSR041AXL-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task5:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-RFX1-human-ENCSR968GIB-Rep3.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-RFX1-human-ENCSR968GIB-Rep3.unique.abs_minus.bigWig
    peaks: hg19-peak-files/K562-RFX1-human-ENCSR968GIB-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task6:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-RFX1-human-ENCSR968GIB-Rep4.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-RFX1-human-ENCSR968GIB-Rep4.unique.abs_minus.bigWig
    peaks: hg19-peak-files/K562-RFX1-human-ENCSR968GIB-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task7:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/MCF-7-RFX1-human-ENCSR066TET-Rep1.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/MCF-7-RFX1-human-ENCSR066TET-Rep1.unique.abs_minus.bigWig
    peaks: hg19-peak-files/MCF-7-RFX1-human-ENCSR066TET-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task8:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/MCF-7-RFX1-human-ENCSR066TET-Rep3.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/MCF-7-RFX1-human-ENCSR066TET-Rep3.unique.abs_minus.bigWig
    peaks: hg19-peak-files/MCF-7-RFX1-human-ENCSR066TET-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task9:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/MCF-7-RFX1-human-ENCSR788XNX-Rep1.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/MCF-7-RFX1-human-ENCSR788XNX-Rep1.unique.abs_minus.bigWig
    peaks: hg19-peak-files/MCF-7-RFX1-human-ENCSR788XNX-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task10:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/MCF-7-RFX1-human-ENCSR788XNX-Rep2.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/MCF-7-RFX1-human-ENCSR788XNX-Rep2.unique.abs_minus.bigWig
    peaks: hg19-peak-files/MCF-7-RFX1-human-ENCSR788XNX-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
