fasta_file: /oak/stanford/groups/akundaje/marinovg/genomes/hg19/sequence/hg19.fa
task_specs:
  task1:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/A549-JUN-human-ENCSR996DUT-Rep1.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/A549-JUN-human-ENCSR996DUT-Rep1.unique.abs_minus.bigWig
    peaks: hg19-peak-files/A549-JUN-human-ENCSR996DUT-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task2:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/A549-JUN-human-ENCSR996DUT-Rep2.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/A549-JUN-human-ENCSR996DUT-Rep2.unique.abs_minus.bigWig
    peaks: hg19-peak-files/A549-JUN-human-ENCSR996DUT-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task3:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/H1-hESC-JUN-human-ENCSR000ECA-Rep1.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/H1-hESC-JUN-human-ENCSR000ECA-Rep1.unique.abs_minus.bigWig
    peaks: hg19-peak-files/H1-hESC-JUN-human-ENCSR000ECA-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task4:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/H1-hESC-JUN-human-ENCSR000ECA-Rep2.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/H1-hESC-JUN-human-ENCSR000ECA-Rep2.unique.abs_minus.bigWig
    peaks: hg19-peak-files/H1-hESC-JUN-human-ENCSR000ECA-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task5:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HeLa-S3-JUN-human-ENCSR000EDG-Rep1.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HeLa-S3-JUN-human-ENCSR000EDG-Rep1.unique.abs_minus.bigWig
    peaks: hg19-peak-files/HeLa-S3-JUN-human-ENCSR000EDG-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task6:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HeLa-S3-JUN-human-ENCSR000EDG-Rep2.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HeLa-S3-JUN-human-ENCSR000EDG-Rep2.unique.abs_minus.bigWig
    peaks: hg19-peak-files/HeLa-S3-JUN-human-ENCSR000EDG-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task7:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-JUN-human-ENCSR000EFS-Rep1.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-JUN-human-ENCSR000EFS-Rep1.unique.abs_minus.bigWig
    peaks: hg19-peak-files/K562-JUN-human-ENCSR000EFS-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task8:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-JUN-human-ENCSR000EFS-Rep2.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-JUN-human-ENCSR000EFS-Rep2.unique.abs_minus.bigWig
    peaks: hg19-peak-files/K562-JUN-human-ENCSR000EFS-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task9:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-JUN-human-ENCSR000FAH-Rep1.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-JUN-human-ENCSR000FAH-Rep1.unique.abs_minus.bigWig
    peaks: hg19-peak-files/K562-JUN-human-ENCSR000EGH-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task10:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-JUN-human-ENCSR000FAH-Rep2.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-JUN-human-ENCSR000FAH-Rep2.unique.abs_minus.bigWig
    peaks: hg19-peak-files/K562-JUN-human-ENCSR000EGH-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task11:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/MCF-7-JUN-human-ENCSR176EXN-Rep1.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/MCF-7-JUN-human-ENCSR176EXN-Rep1.unique.abs_minus.bigWig
    peaks: hg19-peak-files/MCF-7-JUN-human-ENCSR176EXN-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task12:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/MCF-7-JUN-human-ENCSR176EXN-Rep2.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/MCF-7-JUN-human-ENCSR176EXN-Rep2.unique.abs_minus.bigWig
    peaks: hg19-peak-files/MCF-7-JUN-human-ENCSR176EXN-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task13:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/endothelial_cell_of_umbilical_vein-JUN-human-ENCSR000EFA-Rep1.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/endothelial_cell_of_umbilical_vein-JUN-human-ENCSR000EFA-Rep1.unique.abs_minus.bigWig
    peaks: hg19-peak-files/endothelial_cell_of_umbilical_vein-JUN-human-ENCSR000EFA-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task14:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/endothelial_cell_of_umbilical_vein-JUN-human-ENCSR000EFA-Rep2.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/endothelial_cell_of_umbilical_vein-JUN-human-ENCSR000EFA-Rep2.unique.abs_minus.bigWig
    peaks: hg19-peak-files/endothelial_cell_of_umbilical_vein-JUN-human-ENCSR000EFA-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
