fasta_file: /oak/stanford/groups/akundaje/marinovg/genomes/hg19/sequence/hg19.fa
task_specs:
  task1:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/GM12878-BHLHE40-human-ENCSR000DZJ-Rep1.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/GM12878-BHLHE40-human-ENCSR000DZJ-Rep1.unique.abs_minus.bigWig
    peaks: hg19-peak-files/GM12878-BHLHE40-human-ENCSR000DZJ-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task2:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/GM12878-BHLHE40-human-ENCSR000DZJ-Rep2.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/GM12878-BHLHE40-human-ENCSR000DZJ-Rep2.unique.abs_minus.bigWig
    peaks: hg19-peak-files/GM12878-BHLHE40-human-ENCSR000DZJ-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task3:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/GM12878-BHLHE40-human-ENCSR987MTA-Rep4.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/GM12878-BHLHE40-human-ENCSR987MTA-Rep4.unique.abs_minus.bigWig
    peaks: hg19-peak-files/GM12878-BHLHE40-human-ENCSR987MTA-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task4:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/GM12878-BHLHE40-human-ENCSR987MTA-Rep5.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/GM12878-BHLHE40-human-ENCSR987MTA-Rep5.unique.abs_minus.bigWig
    peaks: hg19-peak-files/GM12878-BHLHE40-human-ENCSR987MTA-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task5:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HEK293T-BHLHE40-human-ENCSR789GVU-Rep1.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HEK293T-BHLHE40-human-ENCSR789GVU-Rep1.unique.abs_minus.bigWig
    peaks: hg19-peak-files/HEK293T-BHLHE40-human-ENCSR789GVU-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task6:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HEK293T-BHLHE40-human-ENCSR789GVU-Rep2.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HEK293T-BHLHE40-human-ENCSR789GVU-Rep2.unique.abs_minus.bigWig
    peaks: hg19-peak-files/HEK293T-BHLHE40-human-ENCSR789GVU-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task7:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HepG2-BHLHE40-human-ENCSR000BID-Rep1.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HepG2-BHLHE40-human-ENCSR000BID-Rep1.unique.abs_minus.bigWig
    peaks: hg19-peak-files/HepG2-BHLHE40-human-ENCSR000BID-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task8:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HepG2-BHLHE40-human-ENCSR000BID-Rep2.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HepG2-BHLHE40-human-ENCSR000BID-Rep2.unique.abs_minus.bigWig
    peaks: hg19-peak-files/HepG2-BHLHE40-human-ENCSR000BID-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task9:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HepG2-BHLHE40-human-ENCSR000EDT-Rep1.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HepG2-BHLHE40-human-ENCSR000EDT-Rep1.unique.abs_minus.bigWig
    peaks: hg19-peak-files/HepG2-BHLHE40-human-ENCSR000EDT-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task10:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HepG2-BHLHE40-human-ENCSR000EDT-Rep2.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/HepG2-BHLHE40-human-ENCSR000EDT-Rep2.unique.abs_minus.bigWig
    peaks: hg19-peak-files/HepG2-BHLHE40-human-ENCSR000EDT-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task11:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/IMR-90-BHLHE40-human-ENCSR957KYB-Rep1.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/IMR-90-BHLHE40-human-ENCSR957KYB-Rep1.unique.abs_minus.bigWig
    peaks: hg19-peak-files/IMR-90-BHLHE40-human-ENCSR957KYB-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task12:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/IMR-90-BHLHE40-human-ENCSR957KYB-Rep2.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/IMR-90-BHLHE40-human-ENCSR957KYB-Rep2.unique.abs_minus.bigWig
    peaks: hg19-peak-files/IMR-90-BHLHE40-human-ENCSR957KYB-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task13:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-BHLHE40-human-ENCSR000EGV-Rep1.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-BHLHE40-human-ENCSR000EGV-Rep1.unique.abs_minus.bigWig
    peaks: hg19-peak-files/K562-BHLHE40-human-ENCSR000EGV-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
  task14:
    pos_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-BHLHE40-human-ENCSR000EGV-Rep2.unique.plus.bigWig
    neg_counts: /oak/stanford/groups/akundaje/marinovg/TF-models/2018-11-05-ENCODE-TF-ChIP-seq-for-BPNet/K562-BHLHE40-human-ENCSR000EGV-Rep2.unique.abs_minus.bigWig
    peaks: hg19-peak-files/K562-BHLHE40-human-ENCSR000EGV-optimal_idr.bed
    # optional
    ignore_strand: False
    bias_bigwig:
    bias_model: null
