# R script for Peak Model
#  -- generated by MACS
p <- c(0.048998355764,0.057340480891,0.0654655246949,0.0737456265866,0.0819637052433,0.0818086471554,0.0817466239203,0.0814985309797,0.0816535890675,0.0818706703905,0.0819326936257,0.0818086471554,0.082273821419,0.0822117981838,0.0821807865663,0.0825219143596,0.0828010189177,0.082707984065,0.083142146711,0.0830491118583,0.0829870886231,0.0831111350934,0.0829870886231,0.0828010189177,0.0827700073001,0.0823048330366,0.0821807865663,0.0825219143596,0.0821497749487,0.0820877517135,0.0825529259771,0.0825219143596,0.082490902742,0.0826459608298,0.0831111350934,0.0833902396516,0.0833902396516,0.0829560770056,0.0831731583286,0.0832041699461,0.0828320305353,0.0828630421529,0.0824598911244,0.0824288795068,0.0818706703905,0.0818086471554,0.0821497749487,0.0821807865663,0.0819637052433,0.0816535890675,0.0817156123027,0.081405496127,0.0818706703905,0.0821187633311,0.0820257284784,0.0816846006851,0.0814365077445,0.0813434728918,0.0814365077445,0.0816846006851,0.0812814496567,0.081405496127,0.0807852637755,0.0806302056877,0.0808782986282,0.0811574031864,0.0808162753931,0.0810333567161,0.0807232405404,0.0808782986282,0.081188414804,0.0812504380391,0.0813744845094,0.0812814496567,0.0813434728918,0.0809713334809,0.0809713334809,0.0809403218634,0.0809403218634,0.0809403218634,0.0807232405404,0.0807852637755,0.0805061592174,0.0804751475998,0.0802890778944,0.0806612173052,0.0811574031864,0.0810333567161,0.0810953799512,0.0810643683337,0.0813434728918,0.0815605542148,0.0819326936257,0.0819947168608,0.0819637052433,0.0821497749487,0.081839658773,0.082056740096,0.0824598911244,0.0823358446541,0.0826149492123,0.0825219143596,0.0825839375947,0.0823048330366,0.0825839375947,0.082273821419,0.0822117981838,0.0823048330366,0.0822428098014,0.0825529259771,0.0823978678893,0.0823048330366,0.082490902742,0.0829560770056,0.0828010189177,0.0830181002407,0.0834212512692,0.0833282164164,0.0834522628867,0.0833282164164,0.0832972047989,0.0833282164164,0.0830801234759,0.0826769724474,0.0825839375947,0.0829870886231,0.0825529259771,0.0827700073001,0.0828320305353,0.0827389956826,0.0826149492123,0.0826769724474,0.0826769724474,0.0828010189177,0.0825839375947,0.0819326936257,0.0819637052433,0.0818086471554,0.0815295425972,0.0812194264215,0.0814985309797,0.0817156123027,0.0819637052433,0.0819637052433,0.0824598911244,0.082490902742,0.0821187633311,0.0820257284784,0.0819637052433,0.0821187633311,0.0817776355378,0.0812814496567,0.0813124612742,0.0811263915688,0.0809713334809,0.0809403218634,0.0813124612742,0.0812814496567,0.0814365077445,0.0817466239203,0.08162257745,0.0814985309797,0.0807542521579,0.0806302056877,0.0803821127471,0.0804441359822,0.0806922289228,0.0804441359822,0.0801340198065,0.0797308687781,0.0796068223078,0.0795447990726,0.0799479501011,0.0802580662768,0.0800719965714,0.0798239036308,0.0793277177496,0.0790486131915,0.0788005202509,0.0788315318685,0.0789245667212,0.0792036712793,0.0789245667212,0.0787074853982,0.0791106364266,0.0790486131915,0.079079624809,0.0796378339253,0.0796068223078,0.0793897409848,0.0797618803956,0.0797308687781,0.0803200895119,0.0805991940701,0.0804441359822,0.0806302056877,0.0809713334809,0.0807852637755,0.081188414804,0.0814985309797,0.0813434728918,0.0810333567161,0.0809713334809,0.0810643683337,0.081188414804,0.0811574031864,0.081188414804,0.0812194264215,0.081188414804,0.0814675193621,0.0809093102458,0.0810953799512,0.0809093102458,0.0810023450985,0.0810953799512,0.0812504380391,0.0810643683337,0.0812194264215,0.081188414804,0.0810333567161,0.0813744845094,0.081405496127,0.0810643683337,0.0807852637755,0.0802580662768,0.0801030081889,0.0797618803956,0.0795137874551,0.0796378339253,0.0794207526023,0.0798549152484,0.0800099733362,0.0801960430416,0.0802580662768,0.0806612173052,0.0804131243646,0.0807852637755,0.0808162753931,0.0807542521579,0.0808782986282,0.0805061592174,0.0803821127471,0.0805991940701,0.0802890778944,0.0803200895119,0.0805681824525,0.0806922289228,0.0807542521579,0.0806922289228,0.0808782986282,0.081188414804,0.0810643683337,0.0811574031864,0.0815605542148,0.0816535890675,0.0814675193621,0.0819016820081,0.0823048330366,0.0822428098014,0.0824598911244,0.0823978678893,0.0827389956826,0.0826769724474,0.0824598911244,0.0824598911244,0.0829870886231,0.0828010189177,0.0825529259771,0.0823048330366,0.0820877517135,0.0817156123027,0.0821187633311,0.0817776355378,0.0817466239203,0.0815605542148,0.081405496127,0.0815605542148,0.0812194264215,0.0816535890675,0.0817156123027,0.0820877517135,0.081405496127,0.0815915658324,0.081839658773,0.0820257284784,0.0821187633311,0.0818086471554,0.0823048330366,0.0821497749487,0.0819637052433,0.0815605542148,0.081839658773,0.0821187633311,0.0821807865663,0.0824598911244,0.0821807865663,0.0823358446541,0.0821187633311,0.082707984065,0.0828630421529,0.083359228034,0.0836073209746,0.0836693442097,0.0838864255327,0.0838244022976,0.084444634649,0.0843826114139,0.0845686811193,0.0844756462666,0.0843205881787,0.0847857624423,0.0848167740599,0.0854990296465,0.0854059947938,0.085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m <- 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ycorr <- 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altd  <- c(0, 42, 93, 133, 224, 232, 237, 416, 449, 455, 470, 486, 508, 527, 564, 589)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('77-EBS-CLF-GSE101428/EBSdeltaC-FLAG-Rep1-GSM2915140/all.1x36mers.TAIR10.unique.MACS2_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 0,42,93,133,224,232,237,416,449,455,470,486,508,527,564,589',bty='n')
dev.off()