# R script for Peak Model
#  -- generated by MACS
p <- c(0.0436927124657,0.0507908065485,0.0580466360555,0.0654602009865,0.0719273533731,0.0735047076137,0.0720850887972,0.0709809408287,0.0711386762528,0.0706654699806,0.069245851164,0.0682994386196,0.0671952906512,0.0679839677715,0.0690881157399,0.0671952906512,0.0694035865881,0.0686149094678,0.0664066135309,0.0675107614993,0.0682994386196,0.0694035865881,0.0720850887972,0.0701922637084,0.0676684969234,0.0681417031956,0.0678262323474,0.0687726448918,0.0714541471009,0.0695613220121,0.069245851164,0.0681417031956,0.0675107614993,0.0679839677715,0.0701922637084,0.0697190574362,0.0709809408287,0.0698767928603,0.0673530260752,0.0681417031956,0.0676684969234,0.0682994386196,0.0686149094678,0.069245851164,0.0673530260752,0.0678262323474,0.0668798198031,0.0676684969234,0.0705077345565,0.0722428242212,0.0705077345565,0.0719273533731,0.0690881157399,0.0689303803159,0.0730315013415,0.0731892367656,0.0749243264303,0.0752397972784,0.0753975327025,0.0744511201581,0.0760284743988,0.0746088555822,0.0753975327025,0.0768171515191,0.0731892367656,0.0725582950693,0.071769617949,0.0714541471009,0.0700345282843,0.0679839677715,0.069245851164,0.0690881157399,0.0689303803159,0.0649869947143,0.066722084379,0.0675107614993,0.0659334072587,0.0653024655624,0.0653024655624,0.0684571740437,0.0687726448918,0.0690881157399,0.0698767928603,0.0714541471009,0.0712964116768,0.0706654699806,0.0728737659175,0.07413564931,0.0722428242212,0.0705077345565,0.069245851164,0.0694035865881,0.0686149094678,0.0686149094678,0.0686149094678,0.0686149094678,0.0660911426827,0.0664066135309,0.0676684969234,0.0664066135309,0.0657756718346,0.0648292592902,0.0656179364105,0.0660911426827,0.0649869947143,0.0665643489549,0.069245851164,0.0678262323474,0.0687726448918,0.0703499991325,0.0712964116768,0.0719273533731,0.0722428242212,0.0742933847341,0.07413564931,0.0744511201581,0.071769617949,0.0708232054046,0.071611882525,0.0690881157399,0.0700345282843,0.0698767928603,0.069245851164,0.0662488781068,0.066722084379,0.0635673758977,0.0634096404736,0.064198317594,0.0623054925052,0.0637251113218,0.0612013445368,0.0612013445368,0.0607281382646,0.0616745508089,0.0619900216571,0.0624632279293,0.0648292592902,0.0635673758977,0.0645137884421,0.0657756718346,0.0678262323474,0.0687726448918,0.0684571740437,0.0684571740437,0.0676684969234,0.0682994386196,0.0679839677715,0.0698767928603,0.0695613220121,0.0690881157399,0.0686149094678,0.0694035865881,0.0700345282843,0.0706654699806,0.0712964116768,0.0719273533731,0.0708232054046,0.0709809408287,0.0690881157399,0.0687726448918,0.0687726448918,0.0673530260752,0.0681417031956,0.0682994386196,0.0670375552271,0.0668798198031,0.0675107614993,0.0668798198031,0.0697190574362,0.0684571740437,0.0682994386196,0.0679839677715,0.0676684969234,0.0665643489549,0.0675107614993,0.0679839677715,0.0668798198031,0.0681417031956,0.066722084379,0.0679839677715,0.069245851164,0.0708232054046,0.0708232054046,0.071611882525,0.0724005596453,0.0736624430378,0.0725582950693,0.0711386762528,0.0720850887972,0.0728737659175,0.0708232054046,0.0684571740437,0.0689303803159,0.0678262323474,0.0676684969234,0.0668798198031,0.0679839677715,0.0670375552271,0.066722084379,0.0670375552271,0.0679839677715,0.0701922637084,0.069245851164,0.0709809408287,0.0709809408287,0.0712964116768,0.071611882525,0.0722428242212,0.0720850887972,0.0714541471009,0.0722428242212,0.0700345282843,0.0701922637084,0.0694035865881,0.0686149094678,0.0681417031956,0.0678262323474,0.0695613220121,0.069245851164,0.0697190574362,0.0695613220121,0.0701922637084,0.0719273533731,0.0724005596453,0.0735047076137,0.0725582950693,0.0724005596453,0.071769617949,0.0722428242212,0.0719273533731,0.0722428242212,0.0724005596453,0.0700345282843,0.0679839677715,0.0670375552271,0.0686149094678,0.0703499991325,0.0701922637084,0.071611882525,0.0728737659175,0.0719273533731,0.0739779138859,0.0758707389747,0.0793409183041,0.0806028016966,0.0801295954244,0.0779212994875,0.079025447456,0.0776058286394,0.0768171515191,0.076659416095,0.0750820618544,0.0755552681266,0.0725582950693,0.071611882525,0.0705077345565,0.0709809408287,0.0714541471009,0.0725582950693,0.0725582950693,0.0722428242212,0.0730315013415,0.0727160304934,0.0752397972784,0.0752397972784,0.0760284743988,0.0768171515191,0.0744511201581,0.0736624430378,0.0727160304934,0.0722428242212,0.071611882525,0.0706654699806,0.0690881157399,0.0701922637084,0.0671952906512,0.066722084379,0.0665643489549,0.0679839677715,0.0689303803159,0.0714541471009,0.0719273533731,0.0722428242212,0.0725582950693,0.0733469721897,0.0768171515191,0.0771326223672,0.0793409183041,0.0783945057597,0.07918318288,0.0782367703356,0.0783945057597,0.0785522411838,0.079025447456,0.0779212994875,0.0780790349116,0.07918318288,0.0794986537282,0.0793409183041,0.0782367703356,0.0794986537282,0.0793409183041,0.0796563891522,0.07918318288,0.0801295954244,0.0809182725447,0.0818646850891,0.0810760079688,0.0810760079688,0.0807605371207,0.0804450662725,0.0813914788169,0.0834420393298,0.0832843039057,0.0823378913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m <- 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ycorr <- 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altd  <- c(152, 555, 597)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('05-SOC1-GSE45846/gSOC1-GFP-replicate-3-GSM1116510/all.1x36mers.TAIR10.unique.MACS2_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 152,555,597',bty='n')
dev.off()