python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ATAC-seq_on_Suflolobus_islandicus_fixed_cells.2x36mers.NC_017276.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_islandicus_REY15A_uid162071/NC_017276.chrom.sizes ATAC-seq_on_Suflolobus_islandicus_fixed_cells.2x36mers.NC_017276.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ATAC-seq_on_Suflolobus_islandicus_genomic_DNA.2x36mers.NC_017276.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_islandicus_REY15A_uid162071/NC_017276.chrom.sizes ATAC-seq_on_Suflolobus_islandicus_genomic_DNA.2x36mers.NC_017276.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- ATAC-seq_on_Suflolobus_islandicus_unfixed_cells.2x36mers.NC_017276.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_islandicus_REY15A_uid162071/NC_017276.chrom.sizes ATAC-seq_on_Suflolobus_islandicus_unfixed_cells.2x36mers.NC_017276.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Sequencing_on_Suflolobus_islandicus_genomic_DNA.2x36mers.NC_017276.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_islandicus_REY15A_uid162071/NC_017276.chrom.sizes Sequencing_on_Suflolobus_islandicus_genomic_DNA.2x36mers.NC_017276.unique.wig -notitle -RPM -uniqueBAM &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py ATAC-seq_on_Suflolobus_islandicus_fixed_cells.2x36mers.NC_017276.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_islandicus_REY15A_uid162071/NC_017276.chrom.sizes ATAC-seq_on_Suflolobus_islandicus_fixed_cells.2x36mers.NC_017276.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py ATAC-seq_on_Suflolobus_islandicus_genomic_DNA.2x36mers.NC_017276.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_islandicus_REY15A_uid162071/NC_017276.chrom.sizes ATAC-seq_on_Suflolobus_islandicus_genomic_DNA.2x36mers.NC_017276.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py ATAC-seq_on_Suflolobus_islandicus_unfixed_cells.2x36mers.NC_017276.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_islandicus_REY15A_uid162071/NC_017276.chrom.sizes ATAC-seq_on_Suflolobus_islandicus_unfixed_cells.2x36mers.NC_017276.unique.InsLen -uniqueBAM -normalize &
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py Sequencing_on_Suflolobus_islandicus_genomic_DNA.2x36mers.NC_017276.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Sulfolobus_islandicus_REY15A_uid162071/NC_017276.chrom.sizes Sequencing_on_Suflolobus_islandicus_genomic_DNA.2x36mers.NC_017276.unique.InsLen -uniqueBAM -normalize &