********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.4.1 (Release date: Sat Aug 21 19:23:23 2021 -0700)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.168 C 0.332 G 0.332 T 0.168 

MOTIF 1-CGACGMCGACGHCGW STREME-1
letter-probability matrix: alength= 4 w= 15 nsites= 1537 E= 1.5e-011
 0.011299 0.975253 0.000034 0.013414
 0.000017 0.000034 0.932242 0.067707
 0.748016 0.251933 0.000034 0.000017
 0.067708 0.648559 0.193875 0.089858
 0.000017 0.119602 0.880363 0.000017
 0.362307 0.431221 0.206455 0.000017
 0.000017 0.770012 0.229953 0.000017
 0.000017 0.081295 0.909504 0.009184
 0.570389 0.100746 0.168076 0.160789
 0.095439 0.612480 0.247642 0.044439
 0.061241 0.208330 0.626881 0.103548
 0.349760 0.241932 0.172079 0.236229
 0.078989 0.643571 0.241170 0.036270
 0.014119 0.202341 0.761665 0.021875
 0.608356 0.026458 0.000034 0.365152

MOTIF 2-CGAACWSSNCGWSS STREME-2
letter-probability matrix: alength= 4 w= 14 nsites= 1003 E= 4.1e-003
 0.063299 0.589922 0.210010 0.136769
 0.021808 0.140512 0.818984 0.018696
 0.883700 0.000050 0.000050 0.116200
 0.847748 0.152177 0.000050 0.000025
 0.009361 0.990565 0.000050 0.000025
 0.346730 0.000050 0.000050 0.653171
 0.000025 0.587669 0.412281 0.000025
 0.059150 0.469155 0.409432 0.062262
 0.224078 0.200929 0.296106 0.278887
 0.111015 0.626656 0.156503 0.105827
 0.068485 0.189871 0.702202 0.039441
 0.456261 0.171632 0.129103 0.243004
 0.100123 0.457570 0.297240 0.145067
 0.120779 0.286339 0.502614 0.090268

MOTIF 3-CGGTGATGHCGR STREME-3
letter-probability matrix: alength= 4 w= 12 nsites= 966 E= 4.8e-003
 0.082116 0.695076 0.097487 0.125322
 0.007281 0.079717 0.898469 0.014533
 0.117856 0.101676 0.651933 0.128534
 0.054214 0.017007 0.161701 0.767078
 0.000029 0.036113 0.960203 0.003655
 0.737348 0.149629 0.042156 0.070867
 0.121194 0.154929 0.097641 0.626236
 0.056130 0.015064 0.829871 0.098935
 0.213759 0.229625 0.183253 0.373363
 0.128445 0.556399 0.133233 0.181923
 0.051295 0.155258 0.771662 0.021785
 0.435112 0.142874 0.220750 0.201264

MOTIF 4-CGAGCGCSTCGNCG STREME-4
letter-probability matrix: alength= 4 w= 14 nsites= 414 E= 1.6e-002
 0.103366 0.697138 0.165301 0.034195
 0.042731 0.146095 0.811122 0.000052
 0.961332 0.000102 0.038514 0.000052
 0.000052 0.000102 0.999794 0.000052
 0.000052 0.999794 0.000102 0.000052
 0.076874 0.000102 0.922972 0.000052
 0.096601 0.581744 0.137560 0.184095
 0.021391 0.299902 0.576588 0.102119
 0.139281 0.160307 0.202101 0.498311
 0.052152 0.818773 0.097015 0.032061
 0.059802 0.235359 0.647171 0.057668
 0.279032 0.193042 0.276795 0.251131
 0.130744 0.653051 0.170455 0.045750
 0.008587 0.278563 0.693593 0.019257

MOTIF 5-CTCCGCGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 91 E= 8.2e-002
 0.000995 0.996044 0.001965 0.000995
 0.000995 0.001965 0.001965 0.995074
 0.000995 0.996044 0.001965 0.000995
 0.000995 0.996044 0.001965 0.000995
 0.000995 0.001965 0.996044 0.000995
 0.000995 0.996044 0.001965 0.000995
 0.165272 0.001965 0.823864 0.008898
 0.995074 0.001965 0.001965 0.000995

MOTIF 6-AACAGCAGGY STREME-6
letter-probability matrix: alength= 4 w= 10 nsites= 114 E= 8.9e-001
 0.794941 0.043532 0.067785 0.093742
 0.823411 0.072317 0.050727 0.053544
 0.222084 0.607109 0.156238 0.014569
 0.988952 0.007542 0.000345 0.003161
 0.063728 0.000345 0.935753 0.000175
 0.100944 0.653263 0.245619 0.000175
 0.902571 0.039321 0.057933 0.000175
 0.014569 0.086712 0.848162 0.050557
 0.100615 0.188161 0.611502 0.099722
 0.064951 0.447530 0.197673 0.289846

MOTIF 7-AGGAAATCGA STREME-7
letter-probability matrix: alength= 4 w= 10 nsites= 49 E= 4.0e+000
 0.878102 0.024947 0.072567 0.024384
 0.024384 0.091424 0.859808 0.024384
 0.088148 0.024947 0.862521 0.024384
 0.973336 0.024947 0.001140 0.000577
 0.782856 0.120193 0.096373 0.000577
 0.921120 0.005723 0.072579 0.000577
 0.000577 0.001140 0.024947 0.973336
 0.024384 0.902472 0.072567 0.000577
 0.024384 0.191607 0.712011 0.071998
 0.759056 0.024947 0.143993 0.072004

MOTIF 8-CGGCGGCGAGAAG STREME-8
letter-probability matrix: alength= 4 w= 13 nsites= 38 E= 6.0e+000
 0.000604 0.972690 0.001193 0.025513
 0.000604 0.001193 0.997599 0.000604
 0.025513 0.001193 0.823228 0.150066
 0.000604 0.897962 0.001193 0.100241
 0.125157 0.001193 0.848137 0.025513
 0.000604 0.001193 0.897962 0.100241
 0.100241 0.623955 0.175564 0.100241
 0.224793 0.051011 0.723592 0.000604
 0.947192 0.051011 0.001193 0.000604
 0.000604 0.001193 0.997599 0.000604
 0.897374 0.075920 0.026102 0.000604
 0.673158 0.175583 0.075927 0.075332
 0.050422 0.075920 0.848144 0.025513

********************************************************************************
Stopped because 3 consecutive motifs exceeded the p-value threshold (0.05).
********************************************************************************
COMMAND:	streme --verbosity 1 --oc streme_out -dna --p ./seqs-centered --minw 6 --maxw 15 --time 4988 --order 2 --thresh 0.05 --totallength 4000000
********************************************************************************
CPU:		noble-meme.grid.gs.washington.edu
********************************************************************************
FINALTIME:	77.78 seconds
********************************************************************************