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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.4.1 (Release date: Sat Aug 21 19:23:23 2021 -0700)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.189 C 0.311 G 0.311 T 0.189 

MOTIF 1-CGASGMCGACGACGA STREME-1
letter-probability matrix: alength= 4 w= 15 nsites= 1138 E= 4.3e-008
 0.013562 0.905161 0.071879 0.009398
 0.015644 0.000047 0.984280 0.000028
 0.880332 0.095648 0.012540 0.011480
 0.088518 0.356262 0.513549 0.041671
 0.076458 0.000047 0.881825 0.041671
 0.287708 0.389662 0.173297 0.149332
 0.086437 0.689659 0.145796 0.078108
 0.030219 0.043683 0.920865 0.005234
 0.518562 0.107709 0.138942 0.234788
 0.102484 0.713349 0.128962 0.055205
 0.019808 0.130004 0.820577 0.029610
 0.535306 0.176854 0.160370 0.127470
 0.105176 0.558662 0.273670 0.062492
 0.036897 0.162452 0.798540 0.002110
 0.664832 0.132695 0.080641 0.121833

MOTIF 2-BATGASCGACVMCGM STREME-2
letter-probability matrix: alength= 4 w= 15 nsites= 617 E= 2.3e-003
 0.139219 0.320531 0.263511 0.276738
 0.925247 0.000074 0.074634 0.000045
 0.000045 0.000074 0.000074 0.999806
 0.000045 0.114396 0.885514 0.000045
 0.885483 0.000074 0.048123 0.066320
 0.094484 0.388463 0.517008 0.000045
 0.069632 0.729773 0.000074 0.200521
 0.205493 0.092857 0.655212 0.046438
 0.618735 0.266824 0.008359 0.106082
 0.162415 0.577344 0.202208 0.058034
 0.271768 0.211180 0.420910 0.096142
 0.472245 0.287394 0.077947 0.162415
 0.140875 0.552491 0.246942 0.059692
 0.225375 0.197241 0.471302 0.106082
 0.424883 0.304934 0.121023 0.149160

MOTIF 3-AGGAGTTCGW STREME-3
letter-probability matrix: alength= 4 w= 10 nsites= 440 E= 6.4e-002
 0.680625 0.009391 0.102456 0.207527
 0.013024 0.090418 0.731958 0.164601
 0.046467 0.271501 0.650023 0.032010
 0.908799 0.021244 0.009034 0.060923
 0.007464 0.052020 0.795834 0.144682
 0.000050 0.007355 0.137307 0.855288
 0.209813 0.029421 0.095069 0.665697
 0.072784 0.830121 0.087779 0.009317
 0.109846 0.215587 0.578021 0.096547
 0.386216 0.071900 0.144240 0.397644

MOTIF 4-AACRSTTWT STREME-4
letter-probability matrix: alength= 4 w= 9 nsites= 438 E= 8.2e-002
 0.793595 0.107635 0.000114 0.098655
 0.938973 0.028233 0.026586 0.006207
 0.018099 0.522867 0.236571 0.222463
 0.370537 0.197739 0.413465 0.018260
 0.160761 0.431988 0.270615 0.136636
 0.000069 0.206679 0.000114 0.793138
 0.000069 0.000114 0.000114 0.999703
 0.423642 0.000114 0.000114 0.576130
 0.205304 0.000114 0.041667 0.752915

MOTIF 5-CCCGCGGCG STREME-5
letter-probability matrix: alength= 4 w= 9 nsites= 265 E= 8.5e-002
 0.000506 0.839946 0.075162 0.084386
 0.005560 0.993100 0.000834 0.000506
 0.065182 0.859229 0.031080 0.044509
 0.022233 0.035127 0.926213 0.016427
 0.018655 0.930958 0.001722 0.048665
 0.037259 0.064889 0.895620 0.002232
 0.000506 0.063111 0.935877 0.000506
 0.046173 0.876539 0.048865 0.028423
 0.013180 0.046424 0.931302 0.009094

MOTIF 6-CACCTCC STREME-6
letter-probability matrix: alength= 4 w= 7 nsites= 120 E= 8.7e-002
 0.017164 0.937382 0.028291 0.017164
 0.926255 0.028291 0.028291 0.017164
 0.017164 0.937382 0.028291 0.017164
 0.017164 0.937382 0.028291 0.017164
 0.017164 0.028291 0.028291 0.926255
 0.017164 0.937382 0.028291 0.017164
 0.017164 0.937382 0.028291 0.017164

MOTIF 7-SVAATC STREME-7
letter-probability matrix: alength= 4 w= 6 nsites= 954 E= 4.1e-001
 0.037681 0.470702 0.289922 0.201696
 0.285391 0.254181 0.427518 0.032909
 0.997295 0.001038 0.001038 0.000630
 0.997295 0.001038 0.001038 0.000630
 0.000630 0.001038 0.001038 0.997295
 0.000630 0.997703 0.001038 0.000630

MOTIF 8-TCGACCCCGAGG STREME-8
letter-probability matrix: alength= 4 w= 12 nsites= 103 E= 1.4e+000
 0.060340 0.073670 0.077537 0.788453
 0.036333 0.938798 0.024543 0.000327
 0.000327 0.048547 0.890790 0.060337
 0.832597 0.036545 0.041528 0.089330
 0.084347 0.914787 0.000539 0.000327
 0.012329 0.849781 0.101557 0.036333
 0.012329 0.897799 0.089546 0.000327
 0.012329 0.885803 0.101541 0.000327
 0.024331 0.036545 0.914794 0.024331
 0.897593 0.036545 0.065535 0.000327
 0.113331 0.252621 0.597711 0.036336
 0.108348 0.181726 0.639629 0.070297

MOTIF 9-CTCCHCGAYG STREME-9
letter-probability matrix: alength= 4 w= 10 nsites= 198 E= 4.3e+000
 0.032230 0.967343 0.000266 0.000161
 0.091013 0.000266 0.000266 0.908455
 0.000161 0.675231 0.274317 0.050291
 0.066936 0.771655 0.000266 0.161144
 0.230186 0.436995 0.000266 0.332553
 0.000161 0.911573 0.079725 0.008541
 0.000161 0.000266 0.999412 0.000161
 0.838592 0.000266 0.061149 0.099993
 0.155722 0.422179 0.199912 0.222187
 0.026312 0.066133 0.882256 0.025299

MOTIF 10-CGTCCATACGCG STREME-10
letter-probability matrix: alength= 4 w= 12 nsites= 109 E= 7.0e+000
 0.054575 0.728103 0.189668 0.027654
 0.000733 0.028129 0.916563 0.054575
 0.000733 0.001209 0.001209 0.996849
 0.081495 0.781952 0.135819 0.000733
 0.000733 0.970404 0.028129 0.000733
 0.996849 0.001209 0.001209 0.000733
 0.000733 0.055050 0.001209 0.943008
 0.889159 0.001209 0.081978 0.027654
 0.000733 0.916563 0.028129 0.054575
 0.108423 0.270437 0.593486 0.027654
 0.027654 0.701183 0.216589 0.054575
 0.054575 0.135819 0.781952 0.027654

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Stopped because 3 consecutive motifs exceeded the p-value threshold (0.05).
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COMMAND:	streme --verbosity 1 --oc streme_out -dna --p ./seqs-centered --minw 6 --maxw 15 --time 4982 --order 2 --thresh 0.05 --totallength 4000000
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CPU:		noble-meme.grid.gs.washington.edu
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FINALTIME:	71.59 seconds
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