python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_High_EcoGII.CG-only0 0.5 pieces-2019_02_13_sacCer3_gDNA_High_EcoGII.CG-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_High_EcoGII.CG-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_High_EcoGII.CG-only1 0.5 pieces-2019_02_13_sacCer3_gDNA_High_EcoGII.CG-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_High_EcoGII.CG-only1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_High_EcoGII.GC-only0 0.5 pieces-2019_02_13_sacCer3_gDNA_High_EcoGII.GC-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_High_EcoGII.GC-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_High_EcoGII.GC-only1 0.5 pieces-2019_02_13_sacCer3_gDNA_High_EcoGII.GC-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_High_EcoGII.GC-only1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_High_EcoGII.m6A-only0 0.5 pieces-2019_02_13_sacCer3_gDNA_High_EcoGII.m6A-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_High_EcoGII.m6A-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_High_EcoGII.m6A-only1 0.5 pieces-2019_02_13_sacCer3_gDNA_High_EcoGII.m6A-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_High_EcoGII.m6A-only1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only0 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only1 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only10 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only11 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only12 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only13 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only14 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only15 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only16 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only17 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only18 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only19 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only2 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only20 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only21 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only22 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only3 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only4 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only5 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only6 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only7 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only8 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only9 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.CG-only9.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only0 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only1 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only10 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only11 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only12 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only13 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only14 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only15 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only16 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only17 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only18 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only19 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only2 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only20 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only21 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only22 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only3 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only4 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only5 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only6 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only7 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only8 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only9 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.GC-only9.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only0 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only0.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only0.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only1 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only1.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only1.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only10 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only10.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only10.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only11 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only11.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only11.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only12 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only12.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only12.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only13 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only13.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only13.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only14 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only14.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only14.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only15 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only15.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only15.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only16 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only16.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only16.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only17 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only17.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only17.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only18 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only18.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only18.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only19 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only19.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only19.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only2 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only2.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only2.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only20 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only20.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only20.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only21 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only21.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only21.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only22 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only22.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only22.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only3 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only3.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only3.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only4 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only4.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only4.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only5 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only5.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only5.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only6 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only6.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only6.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only7 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only7.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only7.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only8 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only8.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only8.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only9 0.5 pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only9.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_02_13_sacCer3_gDNA_Low_EcoGII.m6A-only9.BI_w10_a10_b10.reads.tsv