python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces1 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces10 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces100 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces101 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces102 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces103 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces104 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces105 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces106 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces107 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces108 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces109 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces11 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces110 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces111 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces112 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces113 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces114 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces115 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces116 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces117 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces118 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces119 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces12 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces120 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces121 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces122 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces123 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces124 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces125 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces126 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces127 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces128 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces129 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces13 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces130 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces131 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces132 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces133 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces134 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces135 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces136 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces137 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces138 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces139 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces14 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces140 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces141 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces142 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces143 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces144 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces145 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces146 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces147 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces148 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces149 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces15 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces150 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces151 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces152 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces153 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces154 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces155 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces156 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces157 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces158 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces159 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces16 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces160 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces161 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces162 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces163 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces164 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces165 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces166 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces167 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces168 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces169 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces17 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces170 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces171 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces172 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces173 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces174 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces175 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces176 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces177 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces178 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces179 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces18 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces180 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces181 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces182 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces183 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces184 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces185 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces186 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces187 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces188 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces189 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces19 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces190 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces191 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces192 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces193 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces194 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces195 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces196 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces197 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces198 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces199 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces2 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces20 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces200 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces201 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces202 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces203 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces204 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces205 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces206 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces207 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces208 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces209 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces21 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces210 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces211 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces212 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces213 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces214 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces215 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces216 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces217 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces218 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces219 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces22 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces220 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces221 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces222 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces223 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces224 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces225 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces226 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces227 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces228 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces229 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces23 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces230 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces231 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces232 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces233 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces234 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces235 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces236 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces237 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces238 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces239 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces24 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces240 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces241 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces242 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces243 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces244 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces245 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces246 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces247 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces248 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces249 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces25 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces250 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces251 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces252 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces253 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces254 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces255 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces256 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces257 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces258 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces259 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces26 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces260 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces261 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces262 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces263 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces264 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces265 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces266 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces267 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces268 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces269 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces27 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces270 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces271 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces272 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces273 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces274 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces275 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces276 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces277 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces278 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces279 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces28 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces280 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces281 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces282 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces283 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces284 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces285 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces286 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces287 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces288 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces289 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces29 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces290 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces291 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces292 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces293 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces294 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces295 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces296 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces297 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces298 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces299 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces3 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces30 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces300 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces301 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces302 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces303 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces304 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces305 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces306 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces307 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces308 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces309 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces31 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces310 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces311 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces312 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces313 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces314 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces315 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces316 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces317 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces318 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces319 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces32 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces320 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces321 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces322 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces323 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces324 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces325 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces326 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces327 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces328 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces329 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces33 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces330 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces331 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces332 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces333 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces334 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces335 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces336 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces337 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces338 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces339 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces34 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces340 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces341 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces342 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces343 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces344 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces345 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces346 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces347 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces348 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces349 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces35 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces350 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces351 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces352 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces353 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces354 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces355 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces356 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces357 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces358 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces359 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces36 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces360 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces361 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces37 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces38 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces39 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces4 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces40 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces41 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces42 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces43 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces44 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces45 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces46 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces47 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces48 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces49 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces5 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces50 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces51 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces52 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces53 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces54 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces55 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces56 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces57 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces58 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces59 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces6 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces60 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces61 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces62 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces63 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces64 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces65 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces66 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces67 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces68 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces69 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces7 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces70 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces71 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces72 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces73 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces74 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces75 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces76 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces77 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces78 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces79 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces8 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces80 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces81 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces82 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces83 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces84 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces85 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces86 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces87 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces88 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces89 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces9 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces90 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces91 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces92 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces93 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces94 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces95 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces96 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces97 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces98 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces99 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces1 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces10 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces100 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces101 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces102 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces103 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces104 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces105 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces106 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces107 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces108 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces109 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces11 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces110 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces111 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces112 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces113 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces114 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces115 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces116 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces117 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces118 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces119 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces12 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces120 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces121 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces122 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces123 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces124 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces125 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces126 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces127 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces128 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces129 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces13 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces130 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces131 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces132 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces133 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces134 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces135 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces136 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces137 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces138 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces139 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces14 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces140 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces141 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces142 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces143 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces144 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces145 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces146 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces147 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces148 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces149 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces15 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces150 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces151 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces152 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces153 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces154 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces155 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces156 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces157 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces158 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces159 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces16 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces160 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces161 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces162 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces163 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces164 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces165 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces166 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces167 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces168 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces169 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces17 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces170 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces171 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces172 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces173 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces174 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces175 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces176 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces177 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces178 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces179 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces18 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces180 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces181 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces182 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces183 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces184 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces185 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces186 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces187 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces188 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces189 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces19 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces190 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces191 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces192 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces193 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces194 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces195 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces196 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces197 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces198 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces199 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces2 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces20 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces200 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces201 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces202 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces203 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces204 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces205 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces206 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces207 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces208 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces209 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces21 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces210 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces211 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces212 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces213 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces214 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces215 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces216 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces217 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces218 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces219 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces22 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces220 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces221 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces222 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces223 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces224 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces225 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces226 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces227 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces228 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces229 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces23 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces230 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces231 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces232 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces233 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces234 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces235 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces236 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces237 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces238 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces239 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces24 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces240 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces241 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces242 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces243 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces244 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces245 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces246 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces247 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces248 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces249 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces25 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces250 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces251 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces252 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces253 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces254 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces255 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces256 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces257 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces258 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces259 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces26 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces260 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces261 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces262 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces263 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces264 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces265 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces266 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces267 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces268 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces269 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces27 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces270 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces271 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces272 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces273 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces274 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces275 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces276 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces277 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces278 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces279 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces28 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces280 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces281 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces282 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces283 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces284 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces285 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces286 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces287 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces288 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces289 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces29 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces290 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces291 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces292 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces293 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces294 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces295 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces296 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces297 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces298 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces299 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces3 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces30 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces300 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces301 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces302 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces303 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces304 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces305 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces306 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces307 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces308 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces309 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces31 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces310 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces311 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces312 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces313 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces314 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces315 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces316 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces317 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces318 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces319 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces32 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces320 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces321 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces322 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces323 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces324 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces325 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces326 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces327 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces328 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces329 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces33 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces330 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces331 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces332 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces333 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces334 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces335 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces336 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces337 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces338 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces339 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces34 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces340 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces341 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces342 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces343 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces344 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces345 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces346 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces347 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces348 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces349 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces35 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces350 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces351 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces352 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces353 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces354 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces355 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces356 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces357 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces358 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces359 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces36 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces360 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces361 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces37 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces38 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces39 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces4 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces40 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces41 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces42 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces43 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces44 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces45 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces46 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces47 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces48 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces49 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces5 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces50 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces51 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces52 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces53 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces54 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces55 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces56 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces57 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces58 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces59 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces6 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces60 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces61 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces62 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces63 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces64 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces65 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces66 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces67 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces68 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces69 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces7 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces70 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces71 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces72 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces73 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces74 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces75 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces76 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces77 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces78 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces79 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces8 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces80 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces81 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces82 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces83 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces84 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces85 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces86 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces87 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces88 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces89 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces9 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces90 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces91 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces92 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces93 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces94 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces95 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces96 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces97 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces98 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces99 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_0min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces1 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces10 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces100 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces101 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces102 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces103 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces104 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces105 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces106 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces107 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces108 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces109 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces11 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces110 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces111 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces112 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces113 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces114 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces115 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces116 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces117 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces118 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces119 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces12 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces120 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces121 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces122 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces123 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces124 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces125 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces126 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces127 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces128 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces129 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces13 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces130 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces131 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces132 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces133 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces134 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces135 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces136 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces137 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces138 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces139 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces14 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces140 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces141 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces142 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces143 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces144 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces145 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces146 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces147 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces148 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces149 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces15 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces150 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces151 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces152 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces153 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces154 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces155 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces156 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces157 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces158 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces159 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces16 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces160 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces161 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces162 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces163 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces164 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces165 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces166 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces167 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces168 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces169 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces17 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces170 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces171 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces172 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces173 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces174 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces175 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces176 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces177 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces178 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces179 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces18 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces180 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces181 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces182 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces183 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces184 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces185 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces186 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces187 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces188 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces189 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces19 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces190 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces191 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces192 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces193 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces194 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces195 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces196 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces197 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces198 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces199 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces2 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces20 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces200 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces201 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces202 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces203 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces204 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces205 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces206 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces207 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces208 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces209 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces21 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces210 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces211 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces212 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces213 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces214 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces215 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces216 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces217 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces218 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces219 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces22 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces220 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces221 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces222 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces223 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces224 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces225 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces226 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces227 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces228 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces229 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces23 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces230 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces231 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces232 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces233 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces234 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces235 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces236 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces237 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces238 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces239 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces24 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces240 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces241 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces242 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces243 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces244 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces245 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces246 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces247 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces248 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces249 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces25 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces250 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces251 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces252 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces253 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces254 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces255 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces256 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces257 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces258 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces259 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces26 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces260 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces261 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces262 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces263 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces264 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces265 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces266 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces267 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces268 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces269 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces27 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces270 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces271 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces272 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces273 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces274 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces275 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces276 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces277 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces278 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces279 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces28 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces280 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces281 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces282 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces283 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces284 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces285 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces286 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces287 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces288 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces289 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces29 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces290 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces291 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces292 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces293 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces294 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces295 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces296 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces297 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces298 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces299 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces3 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces30 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces300 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces301 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces302 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces303 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces304 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces305 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces306 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces307 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces308 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces309 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces31 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces310 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces311 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces312 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces313 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces314 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces315 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces316 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces317 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces318 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces319 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces32 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces320 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces321 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces322 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces323 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces324 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces325 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces326 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces327 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces328 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces329 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces33 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces330 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces331 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces332 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces333 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces334 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces335 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces336 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces337 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces338 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces339 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces34 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces340 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces341 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces342 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces343 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces344 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces345 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces346 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces347 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces348 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces349 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces35 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces350 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces351 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces352 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces353 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces354 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces355 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces356 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces357 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces358 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces359 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces36 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces360 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces361 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces37 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces38 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces39 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces4 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces40 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces41 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces42 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces43 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces44 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces45 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces46 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces47 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces48 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces49 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces5 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces50 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces51 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces52 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces53 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces54 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces55 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces56 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces57 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces58 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces59 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces6 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces60 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces61 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces62 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces63 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces64 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces65 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces66 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces67 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces68 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces69 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces7 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces70 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces71 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces72 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces73 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces74 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces75 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces76 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces77 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces78 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces79 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces8 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces80 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces81 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces82 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces83 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces84 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces85 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces86 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces87 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces88 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces89 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces9 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces90 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces91 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces92 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces93 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces94 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces95 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces96 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces97 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces98 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces99 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces1 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces10 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces100 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces101 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces102 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces103 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces104 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces105 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces106 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces107 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces108 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces109 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces11 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces110 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces111 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces112 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces113 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces114 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces115 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces116 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces117 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces118 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces119 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces12 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces120 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces121 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces122 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces123 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces124 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces125 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces126 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces127 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces128 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces129 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces13 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces130 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces131 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces132 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces133 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces134 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces135 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces136 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces137 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces138 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces139 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces14 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces140 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces141 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces142 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces143 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces144 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces145 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces146 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces147 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces148 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces149 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces15 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces150 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces151 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces152 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces153 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces154 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces155 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces156 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces157 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces158 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces159 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces16 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces160 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces161 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces162 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces163 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces164 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces165 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces166 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces167 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces168 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces169 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces17 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces170 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces171 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces172 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces173 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces174 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces175 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces176 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces177 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces178 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces179 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces18 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces180 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces181 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces182 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces183 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces184 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces185 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces186 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces187 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces188 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces189 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces19 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces190 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces191 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces192 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces193 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces194 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces195 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces196 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces197 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces198 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces199 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces2 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces20 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces200 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces201 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces202 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces203 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces204 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces205 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces206 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces207 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces208 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces209 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces21 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces210 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces211 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces212 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces213 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces214 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces215 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces216 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces217 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces218 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces219 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces22 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces220 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces221 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces222 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces223 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces224 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces225 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces226 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces227 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces228 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces229 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces23 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces230 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces231 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces232 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces233 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces234 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces235 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces236 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces237 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces238 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces239 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces24 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces240 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces241 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces242 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces243 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces244 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces245 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces246 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces247 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces248 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces249 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces25 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces250 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces251 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces252 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces253 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces254 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces255 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces256 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces257 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces258 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces259 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces26 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces260 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces261 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces262 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces263 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces264 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces265 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces266 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces267 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces268 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces269 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces27 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces270 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces271 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces272 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces273 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces274 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces275 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces276 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces277 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces278 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces279 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces28 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces280 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces281 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces282 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces283 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces284 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces285 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces286 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces287 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces288 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces289 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces29 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces290 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces291 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces292 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces293 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces294 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces295 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces296 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces297 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces298 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces299 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces3 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces30 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces300 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces301 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces302 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces303 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces304 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces305 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces306 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces307 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces308 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces309 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces31 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces310 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces311 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces312 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces313 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces314 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces315 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces316 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces317 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces318 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces319 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces32 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces320 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces321 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces322 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces323 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces324 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces325 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces326 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces327 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces328 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces329 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces33 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces330 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces331 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces332 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces333 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces334 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces335 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces336 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces337 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces338 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces339 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces34 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces340 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces341 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces342 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces343 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces344 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces345 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces346 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces347 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces348 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces349 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces35 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces350 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces351 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces352 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces353 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces354 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces355 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces356 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces357 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces358 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces359 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces36 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces360 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces361 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces37 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces38 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces39 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces4 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces40 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces41 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces42 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces43 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces44 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces45 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces46 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces47 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces48 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces49 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces5 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces50 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces51 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces52 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces53 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces54 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces55 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces56 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces57 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces58 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces59 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces6 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces60 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces61 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces62 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces63 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces64 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces65 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces66 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces67 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces68 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces69 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces7 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces70 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces71 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces72 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces73 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces74 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces75 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces76 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces77 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces78 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces79 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces8 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces80 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces81 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces82 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces83 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces84 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces85 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces86 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces87 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces88 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces89 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces9 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces90 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces91 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces92 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces93 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces94 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces95 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces96 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces97 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces98 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces99 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_30min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces1 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces10 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces100 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces101 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces102 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces103 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces104 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces105 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces106 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces107 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces108 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces109 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces11 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces110 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces111 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces112 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces113 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces114 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces115 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces116 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces117 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces118 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces119 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces12 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces120 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces121 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces122 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces123 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces124 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces125 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces126 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces127 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces128 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces129 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces13 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces130 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces131 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces132 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces133 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces134 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces135 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces136 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces137 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces138 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces139 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces14 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces140 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces141 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces142 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces143 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces144 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces145 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces146 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces147 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces148 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces149 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces15 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces150 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces151 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces152 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces153 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces154 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces155 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces156 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces157 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces158 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces159 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces16 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces160 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces161 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces162 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces163 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces164 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces165 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces166 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces167 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces168 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces169 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces17 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces170 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces171 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces172 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces173 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces174 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces175 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces176 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces177 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces178 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces179 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces18 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces180 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces181 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces182 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces183 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces184 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces185 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces186 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces187 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces188 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces189 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces19 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces190 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces191 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces192 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces193 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces194 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces195 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces196 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces197 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces198 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces199 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces2 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces20 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces200 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces201 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces202 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces203 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces204 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces205 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces206 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces207 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces208 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces209 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces21 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces210 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces211 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces212 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces213 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces214 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces215 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces216 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces217 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces218 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces219 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces22 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces220 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces221 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces222 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces223 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces224 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces225 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces226 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces227 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces228 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces229 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces23 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces230 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces231 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces232 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces233 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces234 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces235 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces236 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces237 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces238 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces239 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces24 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces240 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces241 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces242 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces243 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces244 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces245 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces246 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces247 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces248 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces249 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces25 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces250 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces251 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces252 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces253 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces254 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces255 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces256 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces257 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces258 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces259 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces26 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces260 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces261 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces262 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces263 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces264 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces265 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces266 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces267 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces268 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces269 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces27 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces270 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces271 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces272 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces273 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces274 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces275 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces276 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces277 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces278 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces279 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces28 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces280 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces281 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces282 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces283 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces284 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces285 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces286 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces287 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces288 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces289 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces29 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces290 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces291 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces292 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces293 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces294 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces295 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces296 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces297 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces298 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces299 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces3 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces30 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces300 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces301 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces302 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces303 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces304 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces305 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces306 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces307 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces308 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces309 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces31 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces310 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces311 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces312 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces313 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces314 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces315 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces316 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces317 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces318 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces319 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces32 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces320 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces321 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces322 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces323 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces324 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces325 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces326 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces327 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces328 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces329 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces33 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces330 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces331 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces332 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces333 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces334 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces335 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces336 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces337 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces338 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces339 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces34 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces340 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces341 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces342 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces343 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces344 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces345 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces346 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces347 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces348 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces349 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces35 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces350 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces351 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces352 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces353 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces354 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces355 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces356 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces357 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces358 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces359 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces36 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces360 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces361 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces37 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces38 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces39 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces4 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces40 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces41 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces42 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces43 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces44 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces45 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces46 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces47 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces48 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces49 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces5 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces50 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces51 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces52 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces53 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces54 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces55 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces56 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces57 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces58 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces59 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces6 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces60 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces61 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces62 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces63 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces64 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces65 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces66 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces67 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces68 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces69 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces7 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces70 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces71 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces72 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces73 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces74 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces75 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces76 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces77 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces78 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces79 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces8 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces80 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces81 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces82 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces83 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces84 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces85 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces86 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces87 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces88 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces89 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces9 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces90 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces91 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces92 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces93 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces94 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces95 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces96 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces97 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces98 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces99 0 1 2 50 1 1200 tabix NMI.min50cov.1bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces1 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces10 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces100 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces101 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces102 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces103 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces104 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces105 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces106 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces107 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces108 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces109 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces11 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces110 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces111 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces112 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces113 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces114 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces115 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces116 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces117 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces118 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces119 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces12 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces120 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces121 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces122 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces123 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces124 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces125 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces126 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces127 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces128 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces129 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces13 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces130 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces131 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces132 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces133 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces134 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces135 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces136 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces137 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces138 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces139 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces14 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces140 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces141 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces142 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces143 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces144 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces145 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces146 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces147 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces148 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces149 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces15 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces150 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces151 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces152 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces153 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces154 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces155 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces156 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces157 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces158 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces159 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces16 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces160 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces161 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces162 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces163 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces164 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces165 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces166 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces167 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces168 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces169 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces17 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces170 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces171 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces172 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces173 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces174 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces175 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces176 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces177 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces178 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces179 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces18 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces180 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces181 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces182 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces183 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces184 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces185 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces186 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces187 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces188 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces189 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces19 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces190 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces191 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces192 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces193 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces194 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces195 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces196 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces197 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces198 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces199 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces2 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces20 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces200 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces201 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces202 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces203 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces204 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces205 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces206 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces207 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces208 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces209 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces21 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces210 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces211 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces212 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces213 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces214 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces215 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces216 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces217 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces218 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces219 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces22 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces220 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces221 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces222 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces223 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces224 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces225 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces226 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces227 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces228 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces229 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces23 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces230 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces231 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces232 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces233 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces234 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces235 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces236 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces237 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces238 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces239 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces24 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces240 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces241 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces242 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces243 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces244 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces245 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces246 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces247 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces248 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces249 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces25 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces250 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces251 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces252 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces253 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces254 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces255 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces256 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces257 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces258 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces259 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces26 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces260 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces261 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces262 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces263 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces264 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces265 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces266 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces267 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces268 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces269 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces27 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces270 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces271 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces272 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces273 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces274 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces275 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces276 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces277 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces278 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces279 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces28 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces280 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces281 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces282 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces283 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces284 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces285 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces286 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces287 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces288 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces289 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces29 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces290 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces291 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces292 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces293 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces294 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces295 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces296 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces297 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces298 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces299 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces3 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces30 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces300 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces301 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces302 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces303 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces304 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces305 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces306 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces307 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces308 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces309 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces31 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces310 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces311 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces312 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces313 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces314 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces315 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces316 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces317 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces318 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces319 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces32 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces320 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces321 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces322 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces323 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces324 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces325 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces326 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces327 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces328 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces329 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces33 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces330 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces331 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces332 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces333 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces334 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces335 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces336 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces337 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces338 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces339 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces34 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces340 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces341 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces342 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces343 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces344 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces345 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces346 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces347 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces348 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces349 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces35 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces350 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces351 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces352 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces353 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces354 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces355 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces356 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces357 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces358 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces359 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces36 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces360 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces361 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces37 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces38 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces39 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces4 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces40 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces41 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces42 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces43 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces44 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces45 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces46 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces47 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces48 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces49 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces5 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces50 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces51 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces52 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces53 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces54 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces55 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces56 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces57 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces58 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces59 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces6 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces60 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces61 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces62 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces63 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces64 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces65 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces66 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces67 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces68 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces69 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces7 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces70 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces71 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces72 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces73 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces74 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces75 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces76 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces77 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces78 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces79 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces8 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces80 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces81 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces82 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces83 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces84 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces85 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces86 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces87 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces88 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces89 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces9 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces90 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces91 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces92 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces93 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces94 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces95 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces96 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces97 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces98 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz Saccharomyces_cerevisiae.SacCer_Apr2011.20.TIF-seq-updated.min50FPKM-genes.TSS-600bp.pieces99 0 1 2 50 10 1200 tabix NMI.min50cov.10bp.TIF-seq-updated.min50FPKM-genes.TSS-600bp.2018-07-05_Diamide_60min -expectedMaxDist 1500 -label 4