python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/19.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.19.all
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/21.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.21.all
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/22.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.22.all
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/23.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.23.all
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/25.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.25.all
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/26.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.26.all
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/27.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.27.all
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/29.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.29.all
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/2.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.2.all
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/3.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.3.all
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/4.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.4.all
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/19.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.19.m6A-only -m6A-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/21.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.21.m6A-only -m6A-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/22.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.22.m6A-only -m6A-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/23.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.23.m6A-only -m6A-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/25.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.25.m6A-only -m6A-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/26.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.26.m6A-only -m6A-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/27.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.27.m6A-only -m6A-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/29.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.29.m6A-only -m6A-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/2.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.2.m6A-only -m6A-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/3.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.3.m6A-only -m6A-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/4.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.4.m6A-only -m6A-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/19.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.19.CG-only -m5C-only -CG-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/21.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.21.CG-only -m5C-only -CG-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/22.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.22.CG-only -m5C-only -CG-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/23.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.23.CG-only -m5C-only -CG-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/25.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.25.CG-only -m5C-only -CG-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/26.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.26.CG-only -m5C-only -CG-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/27.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.27.CG-only -m5C-only -CG-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/29.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.29.CG-only -m5C-only -CG-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/2.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.2.CG-only -m5C-only -CG-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/3.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.3.CG-only -m5C-only -CG-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/4.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.4.CG-only -m5C-only -CG-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/19.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.19.GC-only -m5C-only -GC-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/21.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.21.GC-only -m5C-only -GC-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/22.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.22.GC-only -m5C-only -GC-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/23.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.23.GC-only -m5C-only -GC-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/25.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.25.GC-only -m5C-only -GC-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/26.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.26.GC-only -m5C-only -GC-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/27.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.27.GC-only -m5C-only -GC-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/29.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.29.GC-only -m5C-only -GC-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/2.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.2.GC-only -m5C-only -GC-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/3.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.3.GC-only -m5C-only -GC-only
python ~/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo.py /oak/stanford/groups/wjg/zshipony/Nanopore/20180825_Naked/output/tombo_denovo/4.tombo.per_read_stats ~/genomes/sacCer3/sequence/sacCer3.fa 20180825_Naked.4.GC-only -m5C-only -GC-only