Index of /kundaje/marinovg/oak/various/papers/2020_SMAC-seq-yeast/2018-10-10-diamide-ATAC-RNA-HSF_ChIP-NextSeq

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[TXT]ATACTSSscore.txt2018-10-12 21:56 1.2K 
[ ]Cufflinks-2.0.2.FPKM.files2018-10-13 10:11 932  
[ ]Cufflinks-2.0.2.FPKM.subset.UnitMeanZeroVariance.min1FPKM.table2018-12-03 16:33 531K 
[ ]Cufflinks-2.0.2.FPKM.subset.UnitMeanZeroVariance.min5FPKM.table2018-12-03 16:33 199K 
[ ]Cufflinks-2.0.2.FPKM.subset.UnitMeanZeroVariance.min10FPKM.table2018-12-03 16:33 115K 
[ ]Cufflinks-2.0.2.FPKM.subset.UnitMeanZeroVariance.min50FPKM.DPGP-input.DPGP_cluster_sizes.pdf2019-01-15 21:46 118K 
[TXT]Cufflinks-2.0.2.FPKM.subset.UnitMeanZeroVariance.min50FPKM.DPGP-input.DPGP_clusterings.txt2019-01-15 21:46 262K 
[ ]Cufflinks-2.0.2.FPKM.subset.UnitMeanZeroVariance.min50FPKM.DPGP-input.DPGP_gene_expression_fig_1.pdf2019-01-15 21:46 90K 
[ ]Cufflinks-2.0.2.FPKM.subset.UnitMeanZeroVariance.min50FPKM.DPGP-input.DPGP_gene_expression_fig_2.pdf2019-01-15 21:46 50K 
[TXT]Cufflinks-2.0.2.FPKM.subset.UnitMeanZeroVariance.min50FPKM.DPGP-input.DPGP_log_likelihoods.txt2019-01-15 21:46 2.9K 
[TXT]Cufflinks-2.0.2.FPKM.subset.UnitMeanZeroVariance.min50FPKM.DPGP-input.DPGP_optimal_clustering.txt2019-01-15 21:46 3.5K 
[TXT]Cufflinks-2.0.2.FPKM.subset.UnitMeanZeroVariance.min50FPKM.DPGP-input.DPGP_posterior_similarity_matrix.txt2019-01-15 21:46 1.3M 
[ ]Cufflinks-2.0.2.FPKM.subset.UnitMeanZeroVariance.min50FPKM.DPGP-input.DPGP_posterior_similarity_matrix_heatmap.pdf2019-01-15 21:46 80K 
[TXT]Cufflinks-2.0.2.FPKM.subset.UnitMeanZeroVariance.min50FPKM.DPGP-input.DPGP_posterior_similarity_matrix_heatmap_key.txt2019-01-15 21:46 2.7K 
[TXT]Cufflinks-2.0.2.FPKM.subset.UnitMeanZeroVariance.min50FPKM.DPGP-input.txt2019-01-15 21:23 40K 
[IMG]Cufflinks-2.0.2.FPKM.subset.UnitMeanZeroVariance.min50FPKM.kmeans.bwr.png2018-12-03 16:47 37K 
[TXT]Cufflinks-2.0.2.FPKM.subset.UnitMeanZeroVariance.min50FPKM.kmeans.tsv2018-12-03 16:45 40K 
[ ]Cufflinks-2.0.2.FPKM.subset.UnitMeanZeroVariance.min50FPKM.table2018-12-03 16:43 40K 
[ ]Cufflinks-2.0.2.FPKM.subset.log2FPKM+1.min5FPKM.table2018-12-03 16:33 141K 
[ ]Cufflinks-2.0.2.FPKM.subset.log2FPKM+1.min50FPKM.table2018-12-03 16:43 29K 
[ ]Cufflinks-2.0.2.FPKM.subset.table2018-12-03 16:33 300K 
[ ]Cufflinks-2.0.2.FPKM.table2018-10-14 04:04 729K 
[ ]Diamide-0_min-rep1_S21_R1_001.50mers.fastq.lines2018-10-12 20:32 8  
[ ]Diamide-0_min-rep2_S22_R1_001.50mers.fastq.lines2018-10-12 20:32 8  
[ ]Diamide-15_min-rep1_S23_R1_001.50mers.fastq.lines2018-10-12 20:32 8  
[ ]Diamide-15_min-rep2_S24_R1_001.50mers.fastq.lines2018-10-12 20:32 8  
[ ]Diamide-30_min-rep1_S25_R1_001.50mers.fastq.lines2018-10-12 20:32 9  
[ ]Diamide-30_min-rep2_S26_R1_001.50mers.fastq.lines2018-10-12 20:32 8  
[ ]Diamide-45_min-rep1_S27_R1_001.50mers.fastq.lines2018-10-12 20:32 8  
[ ]Diamide-45_min-rep2_S28_R1_001.50mers.fastq.lines2018-10-12 20:32 8  
[ ]Diamide-60_min-rep1_S29_R1_001.50mers.fastq.lines2018-10-12 20:32 8  
[ ]Diamide-60_min-rep2_S30_R1_001.50mers.fastq.lines2018-10-12 20:32 8  
[ ]Diamide_0_S1_R1_001.50mers.fastq.lines2018-10-12 20:32 9  
[ ]Diamide_15_S2_R1_001.50mers.fastq.lines2018-10-12 20:32 9  
[ ]Diamide_30_S3_R1_001.50mers.fastq.lines2018-10-12 20:32 9  
[ ]Diamide_45_S4_R1_001.50mers.fastq.lines2018-10-12 20:32 9  
[ ]Diamide_60_S5_R1_001.50mers.fastq.lines2018-10-12 20:32 9  
[ ]Diamide_Hsf_0_S6_R1_001.50mers.fastq.lines2018-10-12 20:32 9  
[ ]Diamide_Hsf_30_S7_R1_001.50mers.fastq.lines2018-10-12 20:32 9  
[ ]Diamide_Hsf_60_S8_R1_001.50mers.fastq.lines2018-10-12 20:33 10  
[ ]SAMstats.files2018-10-14 03:49 1.8K 
[ ]SAMstats.table2018-10-14 03:49 1.7K 
[DIR]SAMstats/2018-10-14 03:49 -  
[ ]TIF-updated-TSS-upstream500bp.L464-Diamide-0_min-rep1.RPM2018-10-12 21:59 234K 
[ ]TIF-updated-TSS-upstream500bp.L465-Diamide-0_min-rep2.RPM2018-10-12 21:59 235K 
[ ]TIF-updated-TSS-upstream500bp.L466-Diamide-15_min-rep1.RPM2018-10-12 21:59 234K 
[ ]TIF-updated-TSS-upstream500bp.L467-Diamide-15_min-rep2.RPM2018-10-12 22:00 235K 
[ ]TIF-updated-TSS-upstream500bp.L468-Diamide-30_min-rep1.RPM2018-10-12 22:00 234K 
[ ]TIF-updated-TSS-upstream500bp.L469-Diamide-30_min-rep2.RPM2018-10-12 22:00 235K 
[ ]TIF-updated-TSS-upstream500bp.L470-Diamide-45_min-rep1.RPM2018-10-12 21:59 235K 
[ ]TIF-updated-TSS-upstream500bp.L471-Diamide-45_min-rep2.RPM2018-10-12 22:00 235K 
[ ]TIF-updated-TSS-upstream500bp.L472-Diamide-60_min-rep1.RPM2018-10-12 22:00 235K 
[ ]TIF-updated-TSS-upstream500bp.L473-Diamide-60_min-rep2.RPM2018-10-12 21:59 234K 
[ ]TIF-updated-TSS-upstream500bp.files2018-10-12 22:01 876  
[ ]TIF-updated-TSS-upstream500bp.table2018-10-12 22:05 1.1M 
[ ]TIF-updated-TSS-upstream500bp.table.PCA.PCs2018-10-12 22:19 670  
[ ]TIF-updated-TSS-upstream500bp.table.PCA.variance_explained2018-10-12 22:19 191  
[DIR]clustering/2018-12-03 16:58 -  
[ ]coverage-Diamide_0min2018-10-14 03:44 2.1K 
[ ]coverage-Diamide_15min2018-10-14 03:44 2.0K 
[ ]coverage-Diamide_30min2018-10-14 03:44 2.0K 
[ ]coverage-Diamide_45min2018-10-14 03:44 2.0K 
[ ]coverage-Diamide_60min2018-10-14 03:44 2.0K 
[ ]coverage-Diamide_Hsf_0min2018-10-14 03:44 2.1K 
[ ]coverage-Diamide_Hsf_30min2018-10-14 03:44 2.0K 
[ ]coverage-Diamide_Hsf_60min2018-10-14 03:44 2.0K 
[ ]coverage.files2018-10-14 03:44 348  
[ ]coverage.table2018-10-14 03:45 15K 
[TXT]cufflinks.sh2018-10-13 04:25 2.4K 
[TXT]map.sh2018-10-12 20:34 13K 
[ ]sam_reads_genes-Diamide_0min2018-10-13 10:13 94  
[ ]sam_reads_genes-Diamide_15min2018-10-13 10:10 95  
[ ]sam_reads_genes-Diamide_30min2018-10-13 10:11 94  
[ ]sam_reads_genes-Diamide_45min2018-10-13 10:04 92  
[ ]sam_reads_genes-Diamide_60min2018-10-13 10:13 94  
[ ]sam_reads_genes-Diamide_Hsf_0min2018-10-14 04:03 94  
[ ]sam_reads_genes-Diamide_Hsf_30min2018-10-14 04:01 94  
[ ]sam_reads_genes-Diamide_Hsf_60min2018-10-14 04:06 92  
[ ]sam_reads_genes.files2018-10-14 03:44 404  
[ ]sam_reads_genes.table2018-10-14 04:04 537  
[ ]z2018-10-14 05:24 5.0K 
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