python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP104.bed 0 1 2 100 10 100 tabix HSF1-HSP104.10bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP104.bed 0 1 2 100 10 100 tabix HSF1-HSP104.10bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP104.bed 0 1 2 100 10 100 tabix HSF1-HSP104.10bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_0min/2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP104.bed 0 1 2 100 10 100 tabix HSF1-HSP104.10bp.2018-09-13_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_30min/2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP104.bed 0 1 2 100 10 100 tabix HSF1-HSP104.10bp.2018-09-13_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP104.bed 0 1 2 100 1 100 tabix HSF1-HSP104.1bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP104.bed 0 1 2 100 1 100 tabix HSF1-HSP104.1bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP104.bed 0 1 2 100 1 100 tabix HSF1-HSP104.1bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_0min/2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP104.bed 0 1 2 100 1 100 tabix HSF1-HSP104.1bp.2018-09-13_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_30min/2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP104.bed 0 1 2 100 1 100 tabix HSF1-HSP104.1bp.2018-09-13_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP10.bed 0 1 2 100 10 100 tabix HSF1-HSP10.10bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP10.bed 0 1 2 100 10 100 tabix HSF1-HSP10.10bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP10.bed 0 1 2 100 10 100 tabix HSF1-HSP10.10bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_0min/2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP10.bed 0 1 2 100 10 100 tabix HSF1-HSP10.10bp.2018-09-13_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_30min/2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP10.bed 0 1 2 100 10 100 tabix HSF1-HSP10.10bp.2018-09-13_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP10.bed 0 1 2 100 1 100 tabix HSF1-HSP10.1bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP10.bed 0 1 2 100 1 100 tabix HSF1-HSP10.1bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP10.bed 0 1 2 100 1 100 tabix HSF1-HSP10.1bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_0min/2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP10.bed 0 1 2 100 1 100 tabix HSF1-HSP10.1bp.2018-09-13_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_30min/2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP10.bed 0 1 2 100 1 100 tabix HSF1-HSP10.1bp.2018-09-13_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP12.bed 0 1 2 100 10 100 tabix HSF1-HSP12.10bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP12.bed 0 1 2 100 10 100 tabix HSF1-HSP12.10bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP12.bed 0 1 2 100 10 100 tabix HSF1-HSP12.10bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_0min/2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP12.bed 0 1 2 100 10 100 tabix HSF1-HSP12.10bp.2018-09-13_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_30min/2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP12.bed 0 1 2 100 10 100 tabix HSF1-HSP12.10bp.2018-09-13_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP12.bed 0 1 2 100 1 100 tabix HSF1-HSP12.1bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP12.bed 0 1 2 100 1 100 tabix HSF1-HSP12.1bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP12.bed 0 1 2 100 1 100 tabix HSF1-HSP12.1bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_0min/2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP12.bed 0 1 2 100 1 100 tabix HSF1-HSP12.1bp.2018-09-13_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_30min/2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP12.bed 0 1 2 100 1 100 tabix HSF1-HSP12.1bp.2018-09-13_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP26.bed 0 1 2 100 10 100 tabix HSF1-HSP26.10bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP26.bed 0 1 2 100 10 100 tabix HSF1-HSP26.10bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP26.bed 0 1 2 100 10 100 tabix HSF1-HSP26.10bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_0min/2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP26.bed 0 1 2 100 10 100 tabix HSF1-HSP26.10bp.2018-09-13_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_30min/2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP26.bed 0 1 2 100 10 100 tabix HSF1-HSP26.10bp.2018-09-13_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP26.bed 0 1 2 100 1 100 tabix HSF1-HSP26.1bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP26.bed 0 1 2 100 1 100 tabix HSF1-HSP26.1bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP26.bed 0 1 2 100 1 100 tabix HSF1-HSP26.1bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_0min/2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP26.bed 0 1 2 100 1 100 tabix HSF1-HSP26.1bp.2018-09-13_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_30min/2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP26.bed 0 1 2 100 1 100 tabix HSF1-HSP26.1bp.2018-09-13_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP42.bed 0 1 2 100 10 100 tabix HSF1-HSP42.10bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP42.bed 0 1 2 100 10 100 tabix HSF1-HSP42.10bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP42.bed 0 1 2 100 10 100 tabix HSF1-HSP42.10bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_0min/2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP42.bed 0 1 2 100 10 100 tabix HSF1-HSP42.10bp.2018-09-13_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_30min/2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP42.bed 0 1 2 100 10 100 tabix HSF1-HSP42.10bp.2018-09-13_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP42.bed 0 1 2 100 1 100 tabix HSF1-HSP42.1bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP42.bed 0 1 2 100 1 100 tabix HSF1-HSP42.1bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP42.bed 0 1 2 100 1 100 tabix HSF1-HSP42.1bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_0min/2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP42.bed 0 1 2 100 1 100 tabix HSF1-HSP42.1bp.2018-09-13_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_30min/2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP42.bed 0 1 2 100 1 100 tabix HSF1-HSP42.1bp.2018-09-13_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP60.bed 0 1 2 100 10 100 tabix HSF1-HSP60.10bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP60.bed 0 1 2 100 10 100 tabix HSF1-HSP60.10bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP60.bed 0 1 2 100 10 100 tabix HSF1-HSP60.10bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_0min/2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP60.bed 0 1 2 100 10 100 tabix HSF1-HSP60.10bp.2018-09-13_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_30min/2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP60.bed 0 1 2 100 10 100 tabix HSF1-HSP60.10bp.2018-09-13_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP60.bed 0 1 2 100 1 100 tabix HSF1-HSP60.1bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP60.bed 0 1 2 100 1 100 tabix HSF1-HSP60.1bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP60.bed 0 1 2 100 1 100 tabix HSF1-HSP60.1bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_0min/2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP60.bed 0 1 2 100 1 100 tabix HSF1-HSP60.1bp.2018-09-13_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_30min/2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP60.bed 0 1 2 100 1 100 tabix HSF1-HSP60.1bp.2018-09-13_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP78.bed 0 1 2 100 10 100 tabix HSF1-HSP78.10bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP78.bed 0 1 2 100 10 100 tabix HSF1-HSP78.10bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP78.bed 0 1 2 100 10 100 tabix HSF1-HSP78.10bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_0min/2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP78.bed 0 1 2 100 10 100 tabix HSF1-HSP78.10bp.2018-09-13_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_30min/2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP78.bed 0 1 2 100 10 100 tabix HSF1-HSP78.10bp.2018-09-13_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP78.bed 0 1 2 100 1 100 tabix HSF1-HSP78.1bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP78.bed 0 1 2 100 1 100 tabix HSF1-HSP78.1bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP78.bed 0 1 2 100 1 100 tabix HSF1-HSP78.1bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_0min/2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP78.bed 0 1 2 100 1 100 tabix HSF1-HSP78.1bp.2018-09-13_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_30min/2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP78.bed 0 1 2 100 1 100 tabix HSF1-HSP78.1bp.2018-09-13_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP82.bed 0 1 2 100 10 100 tabix HSF1-HSP82.10bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP82.bed 0 1 2 100 10 100 tabix HSF1-HSP82.10bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP82.bed 0 1 2 100 10 100 tabix HSF1-HSP82.10bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_0min/2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP82.bed 0 1 2 100 10 100 tabix HSF1-HSP82.10bp.2018-09-13_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_30min/2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP82.bed 0 1 2 100 10 100 tabix HSF1-HSP82.10bp.2018-09-13_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP82.bed 0 1 2 100 1 100 tabix HSF1-HSP82.1bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP82.bed 0 1 2 100 1 100 tabix HSF1-HSP82.1bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-HSP82.bed 0 1 2 100 1 100 tabix HSF1-HSP82.1bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_0min/2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP82.bed 0 1 2 100 1 100 tabix HSF1-HSP82.1bp.2018-09-13_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_30min/2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP82.bed 0 1 2 100 1 100 tabix HSF1-HSP82.1bp.2018-09-13_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-TMA10.bed 0 1 2 100 10 100 tabix HSF1-TMA10.10bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-TMA10.bed 0 1 2 100 10 100 tabix HSF1-TMA10.10bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-TMA10.bed 0 1 2 100 10 100 tabix HSF1-TMA10.10bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_0min/2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-TMA10.bed 0 1 2 100 10 100 tabix HSF1-TMA10.10bp.2018-09-13_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_30min/2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-TMA10.bed 0 1 2 100 10 100 tabix HSF1-TMA10.10bp.2018-09-13_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-TMA10.bed 0 1 2 100 1 100 tabix HSF1-TMA10.1bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-TMA10.bed 0 1 2 100 1 100 tabix HSF1-TMA10.1bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.tsv.bgz HSF1-TMA10.bed 0 1 2 100 1 100 tabix HSF1-TMA10.1bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_0min/2018_09_13_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-TMA10.bed 0 1 2 100 1 100 tabix HSF1-TMA10.1bp.2018-09-13_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-09-13_Diamide_30min/2018_09_13_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-TMA10.bed 0 1 2 100 1 100 tabix HSF1-TMA10.1bp.2018-09-13_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP104.bed 0 1 2 100 10 100 tabix HSF1-HSP104.10bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP104.bed 0 1 2 100 10 100 tabix HSF1-HSP104.10bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP104.bed 0 1 2 100 10 100 tabix HSF1-HSP104.10bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP104.bed 0 1 2 100 1 100 tabix HSF1-HSP104.1bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP104.bed 0 1 2 100 1 100 tabix HSF1-HSP104.1bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP104.bed 0 1 2 100 1 100 tabix HSF1-HSP104.1bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP10.bed 0 1 2 100 10 100 tabix HSF1-HSP10.10bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP10.bed 0 1 2 100 10 100 tabix HSF1-HSP10.10bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP10.bed 0 1 2 100 10 100 tabix HSF1-HSP10.10bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP10.bed 0 1 2 100 1 100 tabix HSF1-HSP10.1bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP10.bed 0 1 2 100 1 100 tabix HSF1-HSP10.1bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP10.bed 0 1 2 100 1 100 tabix HSF1-HSP10.1bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP12.bed 0 1 2 100 10 100 tabix HSF1-HSP12.10bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP12.bed 0 1 2 100 10 100 tabix HSF1-HSP12.10bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP12.bed 0 1 2 100 10 100 tabix HSF1-HSP12.10bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP12.bed 0 1 2 100 1 100 tabix HSF1-HSP12.1bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP12.bed 0 1 2 100 1 100 tabix HSF1-HSP12.1bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP12.bed 0 1 2 100 1 100 tabix HSF1-HSP12.1bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP26.bed 0 1 2 100 10 100 tabix HSF1-HSP26.10bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP26.bed 0 1 2 100 10 100 tabix HSF1-HSP26.10bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP26.bed 0 1 2 100 10 100 tabix HSF1-HSP26.10bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP26.bed 0 1 2 100 1 100 tabix HSF1-HSP26.1bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP26.bed 0 1 2 100 1 100 tabix HSF1-HSP26.1bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP26.bed 0 1 2 100 1 100 tabix HSF1-HSP26.1bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP42.bed 0 1 2 100 10 100 tabix HSF1-HSP42.10bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP42.bed 0 1 2 100 10 100 tabix HSF1-HSP42.10bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP42.bed 0 1 2 100 10 100 tabix HSF1-HSP42.10bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP42.bed 0 1 2 100 1 100 tabix HSF1-HSP42.1bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP42.bed 0 1 2 100 1 100 tabix HSF1-HSP42.1bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP42.bed 0 1 2 100 1 100 tabix HSF1-HSP42.1bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP60.bed 0 1 2 100 10 100 tabix HSF1-HSP60.10bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP60.bed 0 1 2 100 10 100 tabix HSF1-HSP60.10bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP60.bed 0 1 2 100 10 100 tabix HSF1-HSP60.10bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP60.bed 0 1 2 100 1 100 tabix HSF1-HSP60.1bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP60.bed 0 1 2 100 1 100 tabix HSF1-HSP60.1bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP60.bed 0 1 2 100 1 100 tabix HSF1-HSP60.1bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP78.bed 0 1 2 100 10 100 tabix HSF1-HSP78.10bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP78.bed 0 1 2 100 10 100 tabix HSF1-HSP78.10bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP78.bed 0 1 2 100 10 100 tabix HSF1-HSP78.10bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP78.bed 0 1 2 100 1 100 tabix HSF1-HSP78.1bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP78.bed 0 1 2 100 1 100 tabix HSF1-HSP78.1bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP78.bed 0 1 2 100 1 100 tabix HSF1-HSP78.1bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP82.bed 0 1 2 100 10 100 tabix HSF1-HSP82.10bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP82.bed 0 1 2 100 10 100 tabix HSF1-HSP82.10bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP82.bed 0 1 2 100 10 100 tabix HSF1-HSP82.10bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP82.bed 0 1 2 100 1 100 tabix HSF1-HSP82.1bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP82.bed 0 1 2 100 1 100 tabix HSF1-HSP82.1bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-HSP82.bed 0 1 2 100 1 100 tabix HSF1-HSP82.1bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-TMA10.bed 0 1 2 100 10 100 tabix HSF1-TMA10.10bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-TMA10.bed 0 1 2 100 10 100 tabix HSF1-TMA10.10bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-TMA10.bed 0 1 2 100 10 100 tabix HSF1-TMA10.10bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_0min/2018_07_05_Diamide_0min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-TMA10.bed 0 1 2 100 1 100 tabix HSF1-TMA10.1bp.2018-07-05_Diamide_0min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_30min/2018_07_05_Diamide_30min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-TMA10.bed 0 1 2 100 1 100 tabix HSF1-TMA10.1bp.2018-07-05_Diamide_30min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SingleMoleculeCorrelation-NMI-matrix.py /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-nanopore/2018-07-05_Diamide_60min/2018_07_05_Diamide_60min.all.BI_w10_a10_b10.reads.filtered_1kb_0.75.tsv.bgz HSF1-TMA10.bed 0 1 2 100 1 100 tabix HSF1-TMA10.1bp.2018-07-05_Diamide_60min.all.BI_w10_a10_b10.filtered_1kb_0.75 -expectedMaxDist 10000