python ~/code/makewigglefromBAM-NH.py --- WildType_DRIP-seq_IP-GSM3109274/all.1x25mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes WildType_DRIP-seq_IP-GSM3109274/all.1x25mers.unique.wig -notitle -RPM -uniqueBAM
python ~/code/makewigglefromBAM-NH.py --- WildType_DRIP-seq_INP-GSM3109275/all.1x25mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes WildType_DRIP-seq_INP-GSM3109275/all.1x25mers.unique.wig -notitle -RPM -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WildType_DRIP-seq_IP-GSM3109274/all.1x25mers.unique.bam SAMstats-WildType_DRIP-seq_IP-GSM3109274 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired 
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py WildType_DRIP-seq_INP-GSM3109275/all.1x25mers.unique.bam SAMstats-WildType_DRIP-seq_INP-GSM3109275 -bam /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired