rank	motif_DB	motif_ID	motif_alt_ID	consensus	p-value	adj_p-value	E-value	tests	FASTA_max	pos	neg	PWM_min	TP	%TP	FP	%FP
1	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1580_1.02	Hbp1	HHATWBNN	5.42e-8	2.59e-5	1.86e-2	477	383	383	95	1	235	61.36	29	30.53
2	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0427_1.02	Dnajc21	NNKDDBDYRD	1.00e-7	4.77e-5	3.43e-2	477	384	384	94	1	239	62.24	30	31.91
3	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0991_1.02	Isl2	NTAAKDR	1.78e-7	8.48e-5	6.09e-2	477	383	383	95	1	209	54.57	24	25.26
4	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1015_1.02	Lmx1b	BYAATWH	1.81e-7	8.63e-5	6.20e-2	477	383	383	95	1	200	52.22	22	23.16
5	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1066_1.02	Tlx2	TAWTTAAT	2.46e-7	1.17e-4	8.42e-2	477	383	383	95	1.01	138	36.03	10	10.53
6	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1579_1.02	Tcf7	TTTVHHNNN	4.30e-7	2.05e-4	1.47e-1	477	383	383	95	1	258	67.36	37	38.95
7	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0978_1.02	Cux1	NYDATCHN	4.60e-7	2.19e-4	1.57e-1	477	383	383	95	1	182	47.52	19	20.00
8	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0132_1.02	Hmga2	NNNNRWWWWN	5.41e-7	2.58e-4	1.85e-1	477	383	383	95	1	186	48.56	20	21.05
9	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1033_1.02	Pou3f3	DWATKMRN	8.43e-7	4.02e-4	2.89e-1	477	383	383	95	1	184	48.04	20	21.05
10	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1598_1.02	Tcf7l1	NTTTSWWN	1.08e-6	5.15e-4	3.70e-1	477	383	383	95	1	258	67.36	38	40.00
11	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1018_1.02	Hlx	YHATNNN	1.11e-6	5.29e-4	3.80e-1	477	383	383	95	1	192	50.13	22	23.16
12	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0913_1.02	Hoxc11	DTTWAYKRBN	1.16e-6	5.53e-4	3.97e-1	477	383	383	95	1	173	45.17	18	18.95
13	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1157_1.02	(Hoxb9)_(PBM_CONSTRUCTS)_(DBD_1.00)	WTTWATKRBN	1.24e-6	5.93e-4	4.26e-1	477	383	383	95	1	196	51.17	23	24.21
14	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1243_1.02	Pit1	NNTKMATWWD	1.47e-6	7.03e-4	5.05e-1	477	383	383	95	1	167	43.60	17	17.89
15	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1158_1.02	(Hoxd12)_(PBM_CONSTRUCTS)_(DBD_1.00)	NVYMRTWAAN	1.71e-6	8.16e-4	5.86e-1	477	383	383	95	1	176	45.95	19	20.00
16	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0735_1.02	Foxo6	NNVWMAAYAN	1.72e-6	8.22e-4	5.90e-1	477	314	314	164	1	205	65.29	70	42.68
17	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0908_1.02	Nkx2-1	VYACTYNW	1.76e-6	8.41e-4	6.04e-1	477	389	389	89	1	272	69.92	38	42.70
18	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1268_1.02	Irf2	RWANYGAAAS	2.63e-6	1.25e-3	9.01e-1	477	411	411	67	1.01	278	67.64	25	37.31
19	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1591_1.02	Sox5	ATTGTYNN	2.94e-6	1.40e-3	1.01e0	477	411	411	67	1	222	54.01	16	23.88
20	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5631_1.02	(Mixl1)_(Homo_sapiens)_(DBD_0.95)	NBTAATTRVN	2.97e-6	1.42e-3	1.02e0	477	383	383	95	1.01	121	31.59	9	9.47
21	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0294_1.02	Atf1	NNKDRYRNND	3.98e-6	1.90e-3	1.36e0	477	383	383	95	1	186	48.56	22	23.16
22	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1263_1.02	Irf3	RAWNSGAAAC	4.06e-6	1.93e-3	1.39e0	477	411	411	67	1.01	246	59.85	20	29.85
23	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1026_1.02	Hoxd11	TTWAYKRB	4.45e-6	2.12e-3	1.52e0	477	383	383	95	1	190	49.61	23	24.21
24	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0756_1.02	(ENSMUSG00000090020)_(Strongylocentrotus_purpuratus)_(DBD_0.44)	NNHMACANN	4.84e-6	2.30e-3	1.65e0	477	314	314	164	1	200	63.69	69	42.07
25	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1641_1.02	Tbp	WTAWAWN	4.89e-6	2.33e-3	1.67e0	477	383	383	95	1	185	48.30	22	23.16
26	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1594_1.02	Sox12	HWTTGTYNNN	4.98e-6	2.37e-3	1.70e0	477	411	411	67	1	251	61.07	21	31.34
27	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0734_1.02	Foxc1	WRNRTMAAYA	5.32e-6	2.53e-3	1.82e0	477	394	394	84	1	256	64.97	32	38.10
28	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1600_1.02	Sox7	ATTGTNNN	5.49e-6	2.61e-3	1.88e0	477	411	411	67	1	225	54.74	17	25.37
29	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0988_1.02	Irx6	DTGTHNN	5.79e-6	2.76e-3	1.98e0	477	383	383	95	1	219	57.18	30	31.58
30	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0408_1.02	Zkscan1	DNNYRYRNNH	5.98e-6	2.85e-3	2.04e0	477	383	383	95	1	170	44.39	19	20.00
31	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1044_1.02	Hoxc12	NVYMRTWAAN	5.98e-6	2.85e-3	2.04e0	477	383	383	95	1	170	44.39	19	20.00
32	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1007_1.02	Hoxa11	TTWAYKDBN	6.05e-6	2.88e-3	2.07e0	477	383	383	95	1	193	50.39	24	25.26
33	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0632_1.02	(Dmrta2)_(Homo_sapiens)_(DBD_1.00)	HHWGTWDYNN	6.21e-6	2.96e-3	2.12e0	477	383	383	95	1	206	53.79	27	28.42
34	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0917_1.02	Hoxd13	VYHRTAAAH	6.21e-6	2.96e-3	2.12e0	477	383	383	95	1	206	53.79	27	28.42
35	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1043_1.02	Hmx2	WTAAKYGNNN	6.33e-6	3.01e-3	2.16e0	477	383	383	95	1	150	39.16	15	15.79
36	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0723_1.02	Foxg1	NNRWMAAYAN	6.48e-6	3.08e-3	2.21e0	477	314	314	164	1	210	66.88	75	45.73
37	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1034_1.02	Dbx2	NHVATNA	6.50e-6	3.10e-3	2.22e0	477	383	383	95	1	179	46.74	21	22.11
38	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0987_1.02	Irx5	NDTGTHNNN	6.88e-6	3.28e-3	2.35e0	477	383	383	95	1	214	55.87	29	30.53
39	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1045_1.02	Hoxd10	WTWAYNNN	7.13e-6	3.40e-3	2.44e0	477	383	383	95	1	201	52.48	26	27.37
40	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0721_1.02	Foxj2	RTMAACANN	7.24e-6	3.45e-3	2.48e0	477	394	394	84	1	250	63.45	31	36.90
41	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0964_1.02	Hoxd8	NTWATNDN	7.32e-6	3.49e-3	2.50e0	477	383	383	95	1	169	44.13	19	20.00
42	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0914_1.02	Hoxc8	DTWATBDNN	7.35e-6	3.50e-3	2.51e0	477	383	383	95	1	183	47.78	22	23.16
43	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0945_1.02	Hmbox1	NHWACYHN	7.35e-6	3.50e-3	2.51e0	477	383	383	95	1	183	47.78	22	23.16
44	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0942_1.02	Irx4	DTGTHNNN	7.54e-6	3.59e-3	2.58e0	477	383	383	95	1	230	60.05	33	34.74
45	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1238_1.02	Pou3f1	NDMATWANN	7.78e-6	3.70e-3	2.66e0	477	383	383	95	1	159	41.51	17	17.89
46	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0904_1.02	Hoxa10	TTWAYKDBN	7.96e-6	3.79e-3	2.72e0	477	383	383	95	1	178	46.48	21	22.11
47	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1298_1.02	Srf	HHWWWWWWDD	8.21e-6	3.91e-3	2.81e0	477	383	383	95	1	187	48.83	23	24.21
48	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1587_1.02	Lef1	YCTTTGATST	8.33e-6	3.97e-3	2.85e0	477	366	366	112	1.01	224	61.20	42	37.50
49	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1519_1.02	(Nfat5)_(Gallus_gallus)_(DBD_1.00)	NTTTTCCAYN	8.42e-6	4.01e-3	2.88e0	477	269	269	209	1.01	165	61.34	86	41.15
50	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0784_1.02	Gata5	NNHGATAAN	8.49e-6	4.04e-3	2.90e0	477	383	383	95	1	173	45.17	20	21.05
51	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1041_1.02	Hoxb13	NVYHRTWAAN	8.99e-6	4.28e-3	3.07e0	477	383	383	95	1	182	47.52	22	23.16
52	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0747_1.02	Foxl1	WNNRTAAAYA	9.11e-6	4.34e-3	3.11e0	477	394	394	84	1.01	235	59.64	28	33.33
53	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0909_1.02	Irx2	NNDACAHNN	9.89e-6	4.71e-3	3.38e0	477	383	383	95	1	208	54.31	28	29.47
54	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0131_1.02	Ahctf1	AAATAAAT	1.10e-5	5.25e-3	3.77e0	477	394	394	84	1.01	234	59.39	28	33.33
55	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0724_1.02	Foxp2	RTAAACAA	1.15e-5	5.47e-3	3.93e0	477	394	394	84	1.01	194	49.24	20	23.81
56	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1601_1.02	Sox11	WTTGTBNNN	1.17e-5	5.58e-3	4.01e0	477	411	411	67	1	246	59.85	21	31.34
57	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0966_1.02	Nkx2-2	VYACTYNWN	1.26e-5	6.00e-3	4.31e0	477	312	312	166	1	217	69.55	82	49.40
58	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5446_1.02	(Foxd1)_(Homo_sapiens)_(DBD_0.99)	GTAAACA	1.31e-5	6.21e-3	4.46e0	477	394	394	84	1.01	188	47.72	19	22.62
59	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6129_1.02	Sox2	TTTGCATRACAAWRG	1.38e-5	6.55e-3	4.70e0	477	426	426	52	1.03	183	42.96	7	13.46
60	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0993_1.02	Barhl2	NTAAWYGNB	1.41e-5	6.71e-3	4.82e0	477	383	383	95	1	156	40.73	17	17.89
61	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1050_1.02	Pbx1	NNHRTCANN	1.49e-5	7.08e-3	5.08e0	477	383	383	95	1	184	48.04	23	24.21
62	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0960_1.02	Lmx1a	NYAATHWN	1.54e-5	7.30e-3	5.24e0	477	383	383	95	1	170	44.39	20	21.05
63	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0934_1.02	Hnf1b	NTWACNNN	1.62e-5	7.68e-3	5.51e0	477	383	383	95	1	165	43.08	19	20.00
64	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1057_1.02	Homez	NNHWCGWDNN	1.68e-5	7.97e-3	5.72e0	477	383	383	95	1	160	41.78	18	18.95
65	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1585_1.02	Tcf7l2	YCTTTGATST	1.74e-5	8.29e-3	5.95e0	477	366	366	112	1.01	224	61.20	43	38.39
66	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0274_1.02	Cebpd	RTTRCRHMA	1.78e-5	8.45e-3	6.06e0	477	411	411	67	1	143	34.79	7	10.45
67	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6241_1.02	(Foxn3)_(Homo_sapiens)_(DBD_0.45)	WAAAYAAACA	1.92e-5	9.12e-3	6.55e0	477	394	394	84	1.01	175	44.42	17	20.24
68	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0130_1.02	Setbp1	NDNWWWWNHN	1.93e-5	9.17e-3	6.58e0	477	383	383	95	1	196	51.17	26	27.37
69	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0726_1.02	Foxj3	NRTAAACAWW	2.10e-5	9.94e-3	7.14e0	477	394	394	84	1.01	221	56.09	26	30.95
70	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0290_1.02	Mafk	NWWDTGCNNN	2.10e-5	9.97e-3	7.16e0	477	383	383	95	1	225	58.75	33	34.74
71	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0995_1.02	Gbx2	NTAATYR	2.15e-5	1.02e-2	7.32e0	477	411	411	67	1	174	42.34	11	16.42
72	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1032_1.02	Prop1	NYAATTA	2.17e-5	1.03e-2	7.40e0	477	383	383	95	1	191	49.87	25	26.32
73	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5344_1.02	(Dlx6)_(Homo_sapiens)_(DBD_1.00)	NTAATTRB	2.37e-5	1.12e-2	8.07e0	477	382	382	96	1.01	104	27.23	8	8.33
74	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0983_1.02	Dbx1	ATTAATTA	2.39e-5	1.13e-2	8.12e0	477	382	382	96	1.01	98	25.65	7	7.29
75	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1301_1.02	Mecp2	NNNNHCAYNN	2.39e-5	1.13e-2	8.13e0	477	383	383	95	1	212	55.35	30	31.58
76	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0725_1.02	Foxp1	NGTAAACAN	2.40e-5	1.14e-2	8.17e0	477	384	384	94	1.01	210	54.69	29	30.85
77	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0955_1.02	Cdx1	NVYMATWAA	2.46e-5	1.17e-2	8.39e0	477	383	383	95	1	158	41.25	18	18.95
78	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1027_1.02	Hoxa6	WTAATKRBN	2.46e-5	1.17e-2	8.39e0	477	383	383	95	1	158	41.25	18	18.95
79	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1009_1.02	Hoxa7	NTWATKDNN	2.52e-5	1.20e-2	8.59e0	477	383	383	95	1	153	39.95	17	17.89
80	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0105_1.02	Arid3a	NTTTDATHN	2.65e-5	1.26e-2	9.03e0	477	383	383	95	1	203	53.00	28	29.47
81	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0903_1.02	Hoxb6	TWWTNNN	2.73e-5	1.30e-2	9.30e0	477	383	383	95	1	167	43.60	20	21.05
82	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0630_1.02	(Dmrt1)_(Homo_sapiens)_(DBD_0.98)	WWTGTWDCNW	2.79e-5	1.32e-2	9.50e0	477	413	413	65	1	185	44.79	12	18.46
83	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0928_1.02	Alx3	TAATTDN	2.91e-5	1.38e-2	9.91e0	477	411	411	67	1	172	41.85	11	16.42

# AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28
# The format of this file is described at http://meme-suite.org/doc/ame-output-format.html.
# ame -o AME-CISBP_Mus_musculus-limbDnaseHotspotAllBulkAndSCTSSGoodYellow ../limbDnaseHotspotAllBulkAndSCTSSGoodYellow.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme