rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0945_1.02 Hmbox1 NHWACYHN 2.13e-6 6.76e-4 4.85e-1 317 52 52 266 1 41 78.85 116 43.61 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1043_1.02 Hmx2 WTAAKYGNNN 2.42e-6 7.67e-4 5.51e-1 317 26 26 292 1 22 84.62 108 36.99 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0934_1.02 Hnf1b NTWACNNN 2.48e-6 7.87e-4 5.65e-1 317 261 261 57 1 132 50.57 10 17.54 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0961_1.02 Barhl1 NTAAWYGNN 2.85e-6 9.04e-4 6.49e-1 317 26 26 292 1 22 84.62 109 37.33 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1110_1.02 (Hhex)_(Caenorhabditis_elegans)_(DBD_0.77) NNNYMATNNN 3.77e-6 1.19e-3 8.57e-1 317 41 41 277 1 26 63.41 72 25.99 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0784_1.02 Gata5 NNHGATAAN 4.16e-6 1.32e-3 9.46e-1 317 27 27 291 1 24 88.89 128 43.99 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0408_1.02 Zkscan1 DNNYRYRNNH 4.57e-6 1.45e-3 1.04e0 317 55 55 263 1 39 70.91 98 37.26 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0973_1.02 Hnf1a HTAACYNN 5.14e-6 1.63e-3 1.17e0 317 30 30 288 1 23 76.67 96 33.33 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1067_1.02 Cphx NWNBYHATCA 7.85e-6 2.48e-3 1.78e0 317 27 27 291 1 26 96.30 163 56.01 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0978_1.02 Cux1 NYDATCHN 7.94e-6 2.51e-3 1.80e0 317 37 37 281 1 30 81.08 120 42.70 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0958_1.02 Lhx4 BYAATYW 1.19e-5 3.76e-3 2.70e0 317 37 37 281 1 28 75.68 106 37.72 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1033_1.02 Pou3f3 DWATKMRN 1.28e-5 4.05e-3 2.91e0 317 268 268 50 1 153 57.09 12 24.00 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0130_1.02 Setbp1 NDNWWWWNHN 1.46e-5 4.60e-3 3.30e0 317 261 261 57 1 155 59.39 16 28.07 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0348_1.02 Nfil3 NRTTAYVN 1.56e-5 4.93e-3 3.54e0 317 42 42 276 1 29 69.05 93 33.70 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0969_1.02 Lhx8 NYAATYANN 1.59e-5 5.03e-3 3.61e0 317 36 36 282 1 26 72.22 97 34.40 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0108_1.02 Arid5a NNTAATATTKN 1.63e-5 5.16e-3 3.70e0 317 267 267 51 1.01 69 25.84 1 1.96 17 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0939_1.02 Barx1 NNTAATBRNN 1.66e-5 5.26e-3 3.78e0 317 26 26 292 1 20 76.92 97 33.22 18 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1065_1.02 Noto NNTAATTANN 2.02e-5 6.39e-3 4.58e0 317 111 111 207 1 73 65.77 85 41.06 19 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0293_1.02 Tef NRTTAYRYVA 2.25e-5 7.12e-3 5.11e0 317 41 41 277 1 23 56.10 63 22.74 20 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1054_1.02 Bsx NTAATBRNN 2.28e-5 7.19e-3 5.17e0 317 26 26 292 1 20 76.92 99 33.90 21 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1160_1.02 (NP_001076596.1)_(PBM_CONSTRUCTS)_(DBD_1.00) NYAATYANN 2.28e-5 7.19e-3 5.17e0 317 26 26 292 1 20 76.92 99 33.90 22 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0963_1.02 Lhx3 NNYTAATTA 2.41e-5 7.61e-3 5.46e0 317 26 26 292 1 22 84.62 123 42.12 23 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0993_1.02 Barhl2 NTAAWYGNN 2.41e-5 7.61e-3 5.46e0 317 26 26 292 1 22 84.62 123 42.12 24 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0630_1.02 (Dmrt1)_(Homo_sapiens)_(DBD_0.98) WWTGTWDCNW 2.81e-5 8.86e-3 6.36e0 317 52 52 266 1 40 76.92 122 45.86 25 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1301_1.02 Mecp2 NNNNHCAYNN 2.82e-5 8.91e-3 6.39e0 317 45 45 273 1 37 82.22 136 49.82 26 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1057_1.02 Homez NNHWCGWDNN 2.89e-5 9.11e-3 6.54e0 317 27 27 291 1 22 81.48 116 39.86 27 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0918_1.02 Evx1 NTAATBRNN 2.95e-5 9.32e-3 6.69e0 317 54 54 264 1 35 64.81 90 34.09 28 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1053_1.02 Obox1 HTAATCCYNN 3.06e-5 9.66e-3 6.93e0 317 30 30 288 1.01 18 60.00 64 22.22 29 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1058_1.02 En1 NYAATYA 3.16e-5 9.96e-3 7.15e0 317 42 42 276 1 34 80.95 131 47.46 30 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0104_1.02 Arid3b AWATTAATWAN 3.48e-5 1.10e-2 7.87e0 317 27 27 291 1.01 21 77.78 106 36.43 31 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0131_1.02 Ahctf1 AAATAAAT 3.83e-5 1.21e-2 8.67e0 317 263 263 55 1.01 179 68.06 21 38.18 32 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1000_1.02 Arx NTAATTRV 4.01e-5 1.26e-2 9.07e0 317 26 26 292 1 19 73.08 92 31.51 33 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1016_1.02 Six3 NNDATMY 4.16e-5 1.31e-2 9.41e0 317 254 254 64 1 73 28.74 4 6.25 34 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0313_1.02 Cebpg NRTTRCRHMA 4.42e-5 1.39e-2 9.99e0 317 45 45 273 1 27 60.00 77 28.21 # AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28 # The format of this file is described at http://meme-suite.org/doc/ame-output-format.html. # ame -o AME-CISBP_Mus_musculus-limbDnaseHotspotAllBulkAndSCTSSGoodOrange_Loose ../limbDnaseHotspotAllBulkAndSCTSSGoodOrange_Loose.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme