rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0421_1.02 Klf8 NGGGYGKGKN 5.79e-8 1.73e-5 1.24e-2 298 237 237 62 1.01 131 55.27 11 17.74 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0082_1.02 Tcfap2a HGCCBBVGGS 9.07e-8 2.70e-5 1.94e-2 298 230 230 69 1.01 117 50.87 11 15.94 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0404_1.02 Zfp202 NNNKGGGGSV 1.74e-7 5.19e-5 3.73e-2 298 230 230 69 1 145 63.04 19 27.54 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6482_1.02 (Sp3)_(Homo_sapiens)_(DBD_0.97) VGVVGGGGGCGGGGCBRGSS 2.29e-7 6.83e-5 4.91e-2 298 237 237 62 1.04 131 55.27 12 19.35 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0392_1.02 Sp1 GGGGGCGKG 2.85e-7 8.49e-5 6.10e-2 298 235 235 64 1.01 73 31.06 2 3.12 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0417_1.02 Egr1 NGMGKGGGYG 2.92e-7 8.69e-5 6.24e-2 298 232 232 67 1.01 129 55.60 14 20.90 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2274_1.02 Egr2 GKGYGTGGGYGKRDS 5.44e-7 1.62e-4 1.16e-1 298 241 241 58 1.02 105 43.57 6 10.34 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6463_1.02 (Smad1)_(Homo_sapiens)_(DBD_1.00) RSCCTGTCTGCC 6.22e-7 1.85e-4 1.33e-1 298 160 160 139 1.02 110 68.75 56 40.29 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6201_1.02 (Egr4)_(Homo_sapiens)_(DBD_1.00) GGSGGYRGGGM 9.14e-7 2.72e-4 1.95e-1 298 241 241 58 1.02 97 40.25 5 8.62 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4640_1.02 (Zbtb7a)_(Homo_sapiens)_(DBD_1.00) GGGSRRGGGKCBSBG 2.37e-6 7.05e-4 5.06e-1 298 231 231 68 1.02 108 46.75 11 16.18 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0084_1.02 Tcfap2c HSCCBSAGGS 2.47e-6 7.36e-4 5.28e-1 298 230 230 69 1.01 102 44.35 10 14.49 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0394_1.02 Plagl1 NDGGGGCCMN 2.61e-6 7.77e-4 5.58e-1 298 231 231 68 1 135 58.44 18 26.47 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0405_1.02 Klf7 DGGGCGKGGY 2.80e-6 8.35e-4 6.00e-1 298 237 237 62 1.01 113 47.68 10 16.13 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0439_1.02 Zic2 CNCHGBRGGN 2.92e-6 8.70e-4 6.24e-1 298 234 234 65 1 133 56.84 16 24.62 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2294_1.02 Klf1 WGGGTGTGGYH 3.57e-6 1.06e-3 7.63e-1 298 137 137 162 1.02 69 50.36 40 24.69 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6223_1.02 (ENSMUSG00000044690)_(Homo_sapiens)_(DBD_0.95) GHCAGGAAGWWAY 3.81e-6 1.13e-3 8.14e-1 298 197 197 102 1.02 102 51.78 25 24.51 17 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1552_1.02 Sp110 NNNAGGGVN 4.43e-6 1.32e-3 9.47e-1 298 231 231 68 1 160 69.26 26 38.24 18 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0422_1.02 Zic5 SYRGGGGGTM 4.54e-6 1.35e-3 9.71e-1 298 267 267 32 1.01 121 45.32 2 6.25 19 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6535_1.02 (Wt1)_(Homo_sapiens)_(DBD_0.99) GMGGGGGCGKGGG 4.71e-6 1.40e-3 1.01e0 298 241 241 58 1.02 108 44.81 8 13.79 20 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0403_1.02 Zfp711 NNDGGCCHNN 6.02e-6 1.79e-3 1.29e0 298 231 231 68 1 117 50.65 14 20.59 21 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6321_1.02 (Klf15)_(Homo_sapiens)_(DBD_1.00) RSMKGGGAGDKGGGGSS 6.53e-6 1.94e-3 1.40e0 298 230 230 69 1.03 115 50.00 14 20.29 22 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6127_1.02 Klf2 DGGGYGKGGYB 7.44e-6 2.22e-3 1.59e0 298 237 237 62 1.01 114 48.10 11 17.74 23 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6336_1.02 (Maz)_(Homo_sapiens)_(DBD_0.98) RGGGDRGGGAGGGRGGG 7.54e-6 2.25e-3 1.61e0 298 230 230 69 1.04 133 57.83 19 27.54 24 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0812_1.02 Gcm1 NATRCGGGY 7.90e-6 2.35e-3 1.69e0 298 235 235 64 1.01 91 38.72 7 10.94 25 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5593_1.02 (Klf16)_(Homo_sapiens)_(DBD_0.92) GGGGGCGTGKC 8.40e-6 2.50e-3 1.79e0 298 241 241 58 1.02 111 46.06 9 15.52 26 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6552_1.02 (Zfp148)_(Homo_sapiens)_(DBD_1.00) KGVGKGGGGGAGGGG 8.45e-6 2.52e-3 1.81e0 298 235 235 64 1.03 123 52.34 14 21.88 27 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1573_1.02 Smad3 YGTCKVVNNN 8.46e-6 2.52e-3 1.81e0 298 244 244 55 1 93 38.11 5 9.09 28 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0412_1.02 Zic1 CNCMRCRGGN 1.08e-5 3.21e-3 2.30e0 298 234 234 65 1 136 58.12 18 27.69 29 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0441_1.02 Zic3 CNCHGSRGGN 1.13e-5 3.37e-3 2.42e0 298 234 234 65 1 132 56.41 17 26.15 30 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0443_1.02 Klf12 DGGGYGKGKY 1.38e-5 4.10e-3 2.94e0 298 237 237 62 1.01 102 43.04 9 14.52 31 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6325_1.02 (Klf6)_(Homo_sapiens)_(DBD_1.00) GGGGGCKG 1.77e-5 5.26e-3 3.78e0 298 237 237 62 1.01 124 52.32 14 22.58 32 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6120_1.02 Gli3 STGGGTGGTCY 3.46e-5 1.03e-2 7.36e0 298 232 232 67 1.02 71 30.60 5 7.46 33 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4471_1.02 (Pax5)_(Homo_sapiens)_(DBD_1.00) BCAGYSRAGCGTGAC 3.53e-5 1.05e-2 7.51e0 298 228 228 71 1.03 50 21.93 2 2.82 34 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0414_1.02 Egr3 RCGTGGGYGD 3.84e-5 1.14e-2 8.17e0 298 235 235 64 1.01 104 44.26 11 17.19 35 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0406_1.02 Zbtb7b NNRGGGGKCN 3.96e-5 1.17e-2 8.43e0 298 237 237 62 1.01 125 52.74 15 24.19 36 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0401_1.02 Sp4 RKGGGCGKN 4.39e-5 1.30e-2 9.34e0 298 235 235 64 1.01 55 23.40 2 3.12 37 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6464_1.02 (Smad2)_(Homo_sapiens)_(DBD_0.99) GTGTCHGKCTV 4.51e-5 1.33e-2 9.58e0 298 229 229 70 1.01 110 48.03 15 21.43 # AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28 # The format of this file is described at http://meme-suite.org/doc/ame-output-format.html. # ame -o AME-CISBP_Mus_musculus-limbDnaseHotspotAllBulkAndSCTSSGoodLateMuscle_Loose ../limbDnaseHotspotAllBulkAndSCTSSGoodLateMuscle_Loose.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme