rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1046_1.02 Rhox11 NDWWACABBN 2.99e-8 1.31e-5 9.40e-3 438 187 187 252 1 120 64.17 95 37.70 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0939_1.02 Barx1 NNTAATBRNN 3.70e-6 1.62e-3 1.16e0 438 196 196 243 1 92 46.94 63 25.93 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0909_1.02 Irx2 NNDACAHNN 3.79e-6 1.66e-3 1.19e0 438 198 198 241 1 118 59.60 91 37.76 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0632_1.02 (Dmrta2)_(Homo_sapiens)_(DBD_1.00) WHWGTWDYNN 4.07e-6 1.78e-3 1.28e0 438 197 197 242 1 136 69.04 115 47.52 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0641_1.02 (Dmrta1)_(Drosophila_melanogaster)_(DBD_0.96) WGTWWCNWWW 4.44e-6 1.94e-3 1.40e0 438 197 197 242 1 132 67.01 110 45.45 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0961_1.02 Barhl1 NTAAWYGNN 5.97e-6 2.61e-3 1.88e0 438 196 196 243 1 100 51.02 73 30.04 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0783_1.02 Gata3 NNNHGATWWN 6.81e-6 2.98e-3 2.14e0 438 224 224 215 1 71 31.70 30 13.95 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1027_1.02 Hoxa6 WTAATKRBN 6.97e-6 3.05e-3 2.19e0 438 196 196 243 1 110 56.12 85 34.98 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0317_1.02 Dbp NVTTAYRYAA 1.05e-5 4.61e-3 3.31e0 438 276 276 163 1 85 30.80 21 12.88 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0977_1.02 Cdx2 NVYMATWAA 1.44e-5 6.29e-3 4.52e0 438 197 197 242 1 98 49.75 72 29.75 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1033_1.02 Pou3f3 DWATKMRN 1.67e-5 7.31e-3 5.25e0 438 162 162 277 1 100 61.73 113 40.79 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1072_1.02 Hoxa3 NTAATKRNNN 1.93e-5 8.40e-3 6.03e0 438 196 196 243 1 101 51.53 77 31.69 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0987_1.02 Irx5 NDTGTHNNN 2.10e-5 9.14e-3 6.57e0 438 201 201 238 1 123 61.19 98 41.18 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0300_1.02 Atf2 NRTKACGTMA 2.13e-5 9.30e-3 6.67e0 438 190 190 249 1 40 21.05 18 7.23 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1012_1.02 Hoxb4 NTAATKRNN 2.21e-5 9.61e-3 6.90e0 438 196 196 243 1 105 53.57 82 33.74 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0942_1.02 Irx4 DTGTHNNN 2.21e-5 9.64e-3 6.92e0 438 198 198 241 1 139 70.20 122 50.62 17 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1016_1.02 Six3 NNDATMY 2.25e-5 9.82e-3 7.05e0 438 224 224 215 1 57 25.45 22 10.23 18 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1125_1.02 Nkx1-1 NNTAATKRNN 2.30e-5 1.00e-2 7.18e0 438 196 196 243 1 98 50.00 74 30.45 19 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0988_1.02 Irx6 DTGTHNN 2.99e-5 1.30e-2 9.34e0 438 198 198 241 1 133 67.17 115 47.72 20 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0294_1.02 Atf1 NNKDRYRNND 3.12e-5 1.36e-2 9.73e0 438 183 183 256 1 80 43.72 64 25.00 # AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28 # The format of this file is described at http://meme-suite.org/doc/ame-output-format.html. # ame -o AME-CISBP_Mus_musculus-limbDnaseHotspotAllBulkAndSCTSSGoodGrey_Loose ../limbDnaseHotspotAllBulkAndSCTSSGoodGrey_Loose.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme