rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0820_1.02 (Tcfcp2)_(Gallus_gallus)_(DBD_0.95) TAACCGGTT 4.73e-21 6.26e-18 4.49e-15 1324 78 78 27089 4.34 18 23.08 216 0.80 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6346_1.02 (Mlxipl)_(Homo_sapiens)_(DBD_1.00) VCACGVSGKKGBCMCRTGC 2.71e-18 6.95e-15 4.99e-12 2568 78 78 27089 13.5 15 19.23 162 0.60 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5497_1.02 (Grhl1)_(Homo_sapiens)_(DBD_0.84) AACCGGTYTAACCGGTT 9.14e-16 1.97e-12 1.41e-9 2153 78 78 27089 5.25 18 23.08 446 1.65 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0442_1.02 Zbtb3 NNTGCAGYG 1.82e-12 3.08e-8 2.21e-5 16958 78 78 27089 2.61 9 11.54 72 0.27 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1359_1.02 Mypop NWTTGCGCCR 7.39e-11 1.50e-7 1.08e-4 2027 78 78 27089 1.6 19 24.36 1016 3.75 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6552_1.02 (Zfp148)_(Homo_sapiens)_(DBD_1.00) KGVGKGGGGGAGGGG 4.67e-10 8.85e-6 6.35e-3 18942 78 78 27089 217 10 12.82 199 0.73 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6123_1.02 Zfp281 GRGKTGGGGGAGGGG 5.24e-10 9.33e-6 6.70e-3 17812 78 78 27089 565 9 11.54 142 0.52 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0395_1.02 Zfp187 GTACTAAT 2.60e-9 1.71e-5 1.23e-2 6571 78 78 27089 4.7 9 11.54 172 0.63 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1962_1.02 Tcfcp2l1 CYGGHTBRRRCTGG 4.51e-8 4.37e-4 3.14e-1 9688 78 78 27089 1.86 32 41.03 4152 15.33 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6109_1.02 Vdr GRGTTCAYHGGGTTCA 6.42e-7 1.18e-3 8.49e-1 1842 78 78 27089 4.95 11 14.10 555 2.05 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4688_1.02 (Elf1)_(Homo_sapiens)_(DBD_1.00) ACCCGGAAGY 2.80e-7 1.55e-3 1.12e0 5548 78 78 27089 2.97 21 26.92 2070 7.64 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4767_1.02 (Prdm1)_(Drosophila_melanogaster)_(DBD_0.73) RAAAGTGAAAGT 3.72e-7 3.02e-3 2.17e0 8120 78 78 27089 23.7 13 16.67 777 2.87 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4549_1.02 (Nr2c2)_(Homo_sapiens)_(DBD_0.99) WBYRCTTCCGGGKCR 9.98e-7 5.83e-3 4.18e0 5855 78 78 27089 2.08 25 32.05 3080 11.37 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6535_1.02 (Wt1)_(Homo_sapiens)_(DBD_0.99) GMGGGGGCGKGGG 4.33e-7 7.76e-3 5.57e0 17972 78 78 27089 7.07 37 47.44 5869 21.67 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0179_1.02 Arnt NNTCACGTGCNN 1.35e-6 8.35e-3 6.00e0 6193 78 78 27089 1.61 24 30.77 2911 10.75 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0443_1.02 Klf12 DGGGCGKGKY 7.06e-7 1.13e-2 8.14e0 16164 78 78 27089 1.26 59 75.64 13048 48.17 # AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28 # The format of this file is described at http://meme-suite.org/doc/ame-output-format.html. # ame --control ../mm10-refFlat-2014-10-26.TSS-500bp.fa -o AME-CISBP_Mus_musculus-mm10-refFlat-2014-10-26.TSS-500bp.YellowGreengenes_Loose ../mm10-refFlat-2014-10-26.TSS-500bp.YellowGreengenes_Loose.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme