rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0704_1.02 Elf5 WNVMGGAARY 6.50e-14 4.66e-9 3.34e-6 71637 333 333 96928 1.94 96 28.83 12800 13.21 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6485_1.02 (Spib)_(Homo_sapiens)_(DBD_0.99) ARAAASMGGAAS 1.48e-13 8.58e-9 6.16e-6 58010 333 333 96928 45 21 6.31 698 0.72 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0190_1.02 Srebf2 TCRCGTGA 2.05e-11 2.00e-7 1.43e-4 9752 333 333 96928 15 7 2.10 26 0.03 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6122_1.02 Sfpi1 ARAAAGAGGAAGTGR 3.04e-12 2.35e-7 1.69e-4 77382 333 333 96928 21.3 61 18.32 6658 6.87 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1443_1.02 Hnf4a NNTGRMCYYN 3.94e-11 1.96e-6 1.40e-3 49695 333 333 96928 1.01 224 67.27 47915 49.43 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0696_1.02 Ehf WNVMGGAART 4.96e-11 2.91e-6 2.09e-3 58777 333 333 96928 1.86 118 35.44 19411 20.03 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1457_1.02 Nr2f1 NTGACCYY 1.03e-10 4.45e-6 3.19e-3 43243 333 333 96928 1 205 61.56 42671 44.02 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4453_1.02 (Bcl11a)_(Homo_sapiens)_(DBD_1.00) ADGRGGAASTGAAAV 3.53e-10 2.23e-5 1.60e-2 63309 333 333 96928 2.68 162 48.65 31191 32.18 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0708_1.02 Elf2 DNSCGGAARY 9.08e-10 4.76e-5 3.42e-2 52486 333 333 96928 1.2 166 49.85 32631 33.67 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6544_1.02 (Hivep1)_(Homo_sapiens)_(DBD_0.99) VGGGATTTCCCA 3.59e-9 8.86e-5 6.36e-2 24663 333 333 96928 6.6 34 10.21 3068 3.17 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1552_1.02 Sp110 NNNAGGGVN 1.46e-9 9.76e-5 7.01e-2 66819 333 333 96928 1.07 264 79.28 62171 64.14 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0187_1.02 Srebf1 RTSRSGTGAY 1.47e-8 1.93e-4 1.39e-1 13160 333 333 96928 3.04 6 1.80 41 0.04 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2276_1.02 Erg RCAGGAAGTRR 8.54e-9 5.79e-4 4.16e-1 67804 333 333 96928 6.6 78 23.42 11753 12.13 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0705_1.02 Etv6 NNVMGGAARY 1.00e-8 6.44e-4 4.62e-1 64140 333 333 96928 1.2 210 63.06 46112 47.57 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1922_1.02 Ets1 VRVRCAGGAAGTGGN 1.17e-8 7.21e-4 5.18e-1 61754 333 333 96928 7.62 65 19.52 9058 9.35 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0197_1.02 Usf1 NRTCACGTGVN 5.88e-8 8.19e-4 5.88e-1 13919 333 333 96928 15.4 7 2.10 92 0.09 17 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0220_1.02 Arntl NGTCACGTGH 9.44e-8 1.10e-3 7.90e-1 11659 333 333 96928 15.8 7 2.10 99 0.10 18 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0174_1.02 Tcfe3 NRTCACGHGN 7.71e-8 1.27e-3 9.10e-1 16439 333 333 96928 4.28 8 2.40 147 0.15 19 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6226_1.02 (Fev)_(Homo_sapiens)_(DBD_1.00) CAGGAARTDA 3.94e-8 1.61e-3 1.16e0 40961 333 333 96928 12.3 18 5.41 1039 1.07 20 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2286_1.02 (Hnf4g)_(Homo_sapiens)_(DBD_1.00) TGRMCTTTGNHCYYN 5.60e-8 2.32e-3 1.66e0 41410 333 333 96928 1.07 183 54.95 39110 40.35 21 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0201_1.02 Tcfec NNCACGTGNN 1.86e-7 2.68e-3 1.92e0 14420 333 333 96928 3.86 7 2.10 110 0.11 22 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2391_1.02 (Klf5)_(Homo_sapiens)_(DBD_0.95) DGGGHGGGGC 5.12e-8 3.43e-3 2.46e0 67035 333 333 96928 1.88 239 71.77 55722 57.49 23 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0216_1.02 Nhlh2 NGCAGCTGYN 1.06e-7 5.42e-3 3.89e0 51306 333 333 96928 1.47 149 44.74 30063 31.02 24 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0225_1.02 Usf2 NTCACGTGNN 4.68e-7 5.58e-3 4.01e0 11948 333 333 96928 15.1 7 2.10 127 0.13 25 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2065_1.02 (Esr2)_(Homo_sapiens)_(DBD_1.00) RGGKCANBSTGACCT 2.51e-7 8.29e-3 5.95e0 33178 333 333 96928 1.61 108 32.43 19879 20.51 26 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0193_1.02 Tcfeb GTCACGTG 6.00e-7 9.07e-3 6.52e0 15194 333 333 96928 10.8 7 2.10 132 0.14 27 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0208_1.02 Mitf NRTCACGWGN 5.18e-7 9.08e-3 6.52e0 17628 333 333 96928 5.21 7 2.10 129 0.13 28 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4680_1.02 (Bach2)_(Homo_sapiens)_(DBD_0.72) GTCACGTG 4.68e-7 9.45e-3 6.78e0 20267 333 333 96928 17.4 7 2.10 127 0.13 # AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28 # The format of this file is described at http://meme-suite.org/doc/ame-output-format.html. # ame --control ../gencode.vM4.annotation.TSS-500bp.fa -o AME-CISBP_Mus_musculus-gencode.vM4.annotation.TSS-500bp.YellowGenes ../gencode.vM4.annotation.TSS-500bp.YellowGenes.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme