rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6420_1.02 (Plag1)_(Homo_sapiens)_(DBD_0.96) GGRGGSMHNWVKAGGGG 1.30e-11 5.62e-7 4.03e-4 43346 71 71 96928 12.2 15 21.13 1962 2.02 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0439_1.02 Zic2 CNCNGBRGGN 5.19e-11 1.73e-6 1.24e-3 33370 71 71 96928 1.01 51 71.83 32523 33.55 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5959_1.02 (Zbtb49)_(Homo_sapiens)_(DBD_0.95) TTYCGCYTGGCVSGTCA 5.42e-10 2.29e-6 1.64e-3 4218 71 71 96928 16.5 8 11.27 382 0.39 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0393_1.02 Glis2 NHGRGGGGTCN 1.73e-10 3.98e-6 2.86e-3 23053 71 71 96928 1.86 25 35.21 7963 8.22 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1956_1.02 (Rest)_(Homo_sapiens)_(DBD_0.98) TTCAGCACCATGGACAGCDCC 5.42e-10 4.87e-6 3.49e-3 8970 71 71 96928 6.07e+03 6 8.45 119 0.12 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0429_1.02 Zfp740 NDKGGGGGGG 1.94e-10 7.21e-6 5.18e-3 37202 71 71 96928 1.56 42 59.15 22989 23.72 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0406_1.02 Zbtb7b NNRGGGGKCN 2.83e-10 9.99e-6 7.17e-3 35332 71 71 96928 1.52 26 36.62 8863 9.14 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6535_1.02 (Wt1)_(Homo_sapiens)_(DBD_0.99) GMGGGGGCGKGGG 2.63e-10 1.35e-5 9.72e-3 51463 71 71 96928 1.37 59 83.10 45296 46.73 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6321_1.02 (Klf15)_(Homo_sapiens)_(DBD_1.00) RSMKGGGAGDKGGGGSS 2.95e-10 1.39e-5 9.99e-3 47228 71 71 96928 1.26 57 80.28 42313 43.65 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0404_1.02 Zfp202 NNNKGGGGSV 6.47e-10 2.83e-5 2.03e-2 43746 71 71 96928 1.17 44 61.97 26063 26.89 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0183_1.02 Hey2 GNCACGTGY 2.99e-9 3.49e-5 2.51e-2 11663 71 71 96928 1.01 28 39.44 11485 11.85 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0414_1.02 Egr3 RCGTGGGCGD 9.69e-10 3.66e-5 2.62e-2 37731 71 71 96928 1 53 74.65 37643 38.84 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4536_1.02 (E2f1)_(Homo_sapiens)_(DBD_0.98) VRRVRGVGCGCGCRS 1.55e-9 4.84e-5 3.47e-2 31121 71 71 96928 1.23 45 63.38 27898 28.78 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0082_1.02 Tcfap2a HGCCBBVGGS 2.12e-9 8.19e-5 5.88e-2 38640 71 71 96928 1.01 53 74.65 38355 39.57 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0392_1.02 Sp1 GGGGGCGKG 2.45e-9 9.08e-5 6.52e-2 37114 71 71 96928 2.17 39 54.93 21603 22.29 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0394_1.02 Plagl1 NDGGGGCCMN 4.06e-9 1.53e-4 1.10e-1 37570 71 71 96928 1.38 29 40.85 12476 12.87 17 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5974_1.02 (Zfp524)_(Homo_sapiens)_(DBD_0.92) GGGTTCRAGGGT 3.30e-8 3.42e-4 2.46e-1 10378 71 71 96928 1.83 19 26.76 5906 6.09 18 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0422_1.02 Zic5 SYRGGGGGTM 1.23e-8 3.80e-4 2.72e-1 30749 71 71 96928 1.55 19 26.76 5552 5.73 19 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5593_1.02 (Klf16)_(Homo_sapiens)_(DBD_0.92) GGGGGCGTGKC 1.20e-8 5.67e-4 4.07e-1 47421 71 71 96928 2.16 45 63.38 29602 30.54 20 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5702_1.02 (Pax1)_(Homo_sapiens)_(DBD_1.00) DKCABTCAWGCGTGACG 1.74e-7 5.99e-4 4.30e-1 3439 71 71 96928 6.21 7 9.86 542 0.56 21 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0215_1.02 Hes5 VVCACGTGBB 6.32e-8 7.66e-4 5.50e-1 12130 71 71 96928 1.42 14 19.72 3151 3.25 22 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0401_1.02 Sp4 RKGGGCGKN 2.76e-8 9.35e-4 6.71e-1 33897 71 71 96928 1.07 47 66.20 32818 33.86 23 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6325_1.02 (Klf6)_(Homo_sapiens)_(DBD_1.00) GGGGGCKG 3.21e-8 1.47e-3 1.06e0 45971 71 71 96928 2.11 35 49.30 19360 19.97 24 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6273_1.02 (Hey1)_(Homo_sapiens)_(DBD_0.95) GBBGGCWCGTGGCHTBV 1.58e-7 2.16e-3 1.55e0 13740 71 71 96928 1.16 26 36.62 12003 12.38 25 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0421_1.02 Klf8 NGGGYGKGKN 6.58e-8 3.47e-3 2.49e0 52891 71 71 96928 1.1 55 77.46 44637 46.05 26 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0417_1.02 Egr1 NGMGKGGGYG 1.19e-7 5.10e-3 3.66e0 43035 71 71 96928 1.23 42 59.15 28089 28.98 27 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5856_1.02 (Sp8)_(Homo_sapiens)_(DBD_1.00) RGKGGGCGTGGY 1.14e-7 5.28e-3 3.79e0 46662 71 71 96928 3.7 26 36.62 11808 12.18 28 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6146_1.02 (Tcfap2d)_(Homo_sapiens)_(DBD_1.00) ACGSGCCBCRGGCS 2.94e-7 5.46e-3 3.92e0 18654 71 71 96928 2.6 21 29.58 8276 8.54 29 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0443_1.02 Klf12 DGGGCGKGKY 1.32e-7 5.63e-3 4.04e0 42743 71 71 96928 1.06 51 71.83 39650 40.91 30 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5592_1.02 (Klf14)_(Homo_sapiens)_(DBD_0.96) ARGKGGGCGTGGYM 3.07e-7 6.25e-3 4.49e0 20382 71 71 96928 1.03 34 47.89 20080 20.72 31 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0211_1.02 Mlxip BCACGTGK 4.34e-7 6.37e-3 4.58e0 14736 71 71 96928 3.64 12 16.90 2610 2.69 32 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4537_1.02 (E2f4)_(Homo_sapiens)_(DBD_1.00) SGCGGGAARWTBVRR 3.46e-7 6.70e-3 4.81e0 19394 71 71 96928 1.02 33 46.48 19148 19.75 33 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0206_1.02 Bhlhe41 NCRCGTGMB 7.82e-7 6.78e-3 4.87e0 8702 71 71 96928 1.29 13 18.31 3306 3.41 34 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0189_1.02 Id2 RCACGTGR 4.67e-7 6.81e-3 4.89e0 14642 71 71 96928 1.75 26 36.62 12681 13.08 35 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5711_1.02 (Pax9)_(Homo_sapiens)_(DBD_1.00) KKCASTCAWGCGTGACS 2.97e-6 7.27e-3 5.22e0 2452 71 71 96928 3.34 7 9.86 835 0.86 36 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0191_1.02 Hes1 VVCACGYGNN 8.39e-7 7.46e-3 5.36e0 8922 71 71 96928 1.02 20 28.17 8041 8.30 37 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5209_1.02 (Sp5)_(Drosophila_melanogaster)_(DBD_0.93) GKGGGCGKRKC 3.63e-7 1.27e-2 9.11e0 35198 71 71 96928 1.51 39 54.93 25650 26.46 # AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28 # The format of this file is described at http://meme-suite.org/doc/ame-output-format.html. # ame --control ../gencode.vM4.annotation.TSS-500bp.fa -o AME-CISBP_Mus_musculus-gencode.vM4.annotation.TSS-500bp.Redgenes_Loose ../gencode.vM4.annotation.TSS-500bp.Redgenes_Loose.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme