rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6270_1.02 (Nhlh1)_(Homo_sapiens)_(DBD_1.00) RRGGMCGCAGCTGMKMCCCV 2.73e-13 4.47e-9 3.21e-6 16360 88 88 96928 612 6 6.82 24 0.02 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2318_1.02 Tcf3 SMCAGCTGCHB 3.14e-11 1.45e-6 1.04e-3 46108 88 88 96928 3.41 41 46.59 15777 16.28 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0404_1.02 Zfp202 NNNKGGGGSV 9.86e-11 4.76e-6 3.42e-3 48313 88 88 96928 1.24 54 61.36 27347 28.21 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2300_1.02 Myog RRCAGCTGSNV 2.80e-9 1.14e-4 8.21e-2 40891 88 88 96928 3.41 39 44.32 16630 17.16 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1419_1.02 Gm98 YSGTRCCABS 1.00e-7 2.92e-4 2.10e-1 2917 88 88 96928 1.21 5 5.68 116 0.12 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0441_1.02 Zic3 CNCHGSRGGN 9.04e-9 3.58e-4 2.57e-1 39639 88 88 96928 1.06 53 60.23 29645 30.58 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0394_1.02 Plagl1 NDGGGGCCMN 8.53e-9 3.74e-4 2.68e-1 43792 88 88 96928 1.54 33 37.50 12768 13.17 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2317_1.02 Tcf12 RACAGCTGSNV 1.93e-8 7.77e-4 5.58e-1 40244 88 88 96928 3.14 38 43.18 16987 17.53 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4640_1.02 (Zbtb7a)_(Homo_sapiens)_(DBD_1.00) GGGSRRGGGKCBSBG 1.82e-8 8.15e-4 5.85e-1 44884 88 88 96928 1.54 57 64.77 34214 35.30 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6330_1.02 (Mafa)_(Homo_sapiens)_(DBD_1.00) STGCTGACBMYGCAGYHTYCV 4.08e-8 1.76e-3 1.26e0 43233 88 88 96928 16.1 10 11.36 1030 1.06 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0439_1.02 Zic2 CNCNGBRGGN 1.08e-7 4.26e-3 3.06e0 39353 88 88 96928 1.06 52 59.09 30693 31.67 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6321_1.02 (Klf15)_(Homo_sapiens)_(DBD_1.00) RSMKGGGAGDKGGGGSS 8.64e-8 4.37e-3 3.14e0 50644 88 88 96928 4.09 43 48.86 22156 22.86 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1552_1.02 Sp110 NNNAGGGVN 1.03e-7 6.20e-3 4.45e0 60218 88 88 96928 1.5 33 37.50 14136 14.58 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0422_1.02 Zic5 SYRGGGGGTM 1.81e-7 6.82e-3 4.89e0 37838 88 88 96928 1.01 58 65.91 37302 38.48 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0405_1.02 Klf7 DGGGCGKGGY 1.53e-7 7.30e-3 5.24e0 47965 88 88 96928 1.02 67 76.14 47335 48.84 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0216_1.02 Nhlh2 NGCAGCTGYN 1.41e-7 7.34e-3 5.27e0 52271 88 88 96928 1.11 66 75.00 46058 47.52 17 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0406_1.02 Zbtb7b NNRGGGGKCN 1.88e-7 7.59e-3 5.45e0 40422 88 88 96928 1.44 34 38.64 15266 15.75 18 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2391_1.02 (Klf5)_(Homo_sapiens)_(DBD_0.95) DGGGHGGGGC 1.92e-7 1.18e-2 8.44e0 61734 88 88 96928 1.74 69 78.41 50011 51.60 19 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6499_1.02 (Rbpj)_(Homo_sapiens)_(DBD_1.00) CGTGGGAAM 2.47e-7 1.24e-2 8.89e0 50348 88 88 96928 2.03 36 40.91 17024 17.56 # AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28 # The format of this file is described at http://meme-suite.org/doc/ame-output-format.html. # ame --control ../gencode.vM4.annotation.TSS-500bp.fa -o AME-CISBP_Mus_musculus-gencode.vM4.annotation.TSS-500bp.PurpleGenes ../gencode.vM4.annotation.TSS-500bp.PurpleGenes.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme