rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4688_1.02 (Elf1)_(Homo_sapiens)_(DBD_1.00) ACCCGGAAGY 1.17e-14 2.04e-10 1.46e-7 17432 202 202 96928 61.7 15 7.43 387 0.40 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0443_1.02 Klf12 DGGGYGKGKY 9.69e-14 4.89e-9 3.51e-6 50410 202 202 96928 2.39 73 36.14 14465 14.92 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4640_1.02 (Zbtb7a)_(Homo_sapiens)_(DBD_1.00) GGGSRRGGGKCBSBG 4.25e-13 2.07e-8 1.49e-5 48845 202 202 96928 9.84 39 19.31 4832 4.99 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0421_1.02 Klf8 NGGGYGKGKN 3.59e-12 2.09e-7 1.50e-4 58234 202 202 96928 2.18 51 25.25 8463 8.73 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0405_1.02 Klf7 DGGGCGKGGY 1.51e-11 7.80e-7 5.60e-4 51719 202 202 96928 3.43 47 23.27 7630 7.87 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5209_1.02 (Sp5)_(Drosophila_melanogaster)_(DBD_0.93) GKGGGCGKRKC 8.81e-11 3.70e-6 2.65e-3 41972 202 202 96928 7.82 40 19.80 6051 6.24 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5592_1.02 (Klf14)_(Homo_sapiens)_(DBD_0.96) ARGKGGGCGTGGYM 1.73e-10 4.37e-6 3.14e-3 25326 202 202 96928 1.21 88 43.56 22564 23.28 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6135_1.02 Tbx2 RRACTACAWHTCCCAGVADGC 1.45e-9 1.81e-5 1.30e-2 12457 202 202 96928 2.5e+05 8 3.96 145 0.15 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6535_1.02 (Wt1)_(Homo_sapiens)_(DBD_0.99) GMGGGGGCGKGGG 3.79e-10 2.17e-5 1.55e-2 57175 202 202 96928 3.05 121 59.90 37027 38.20 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6529_1.02 (Ubp1)_(Homo_sapiens)_(DBD_0.93) TYTCTGS 3.09e-9 2.31e-4 1.66e-1 74903 202 202 96928 5.12 6 2.97 53 0.05 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4484_1.02 (Zfp143)_(Homo_sapiens)_(DBD_0.97) CTGGGARTTGTAGTY 1.69e-8 2.55e-4 1.83e-1 15096 202 202 96928 278 21 10.40 2261 2.33 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5490_1.02 (Glis1)_(Homo_sapiens)_(DBD_1.00) GCDTCGTGGGGGGTCK 2.12e-7 3.10e-4 2.22e-1 1460 202 202 96928 6.57 9 4.46 394 0.41 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1871_1.02 Klf4 DGGGYGKGGC 1.30e-8 7.00e-4 5.02e-1 54018 202 202 96928 12 28 13.86 3868 3.99 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6287_1.02 (Hsf2)_(Homo_sapiens)_(DBD_0.98) VGAABRTTCTAGAA 1.79e-8 7.73e-4 5.55e-1 43267 202 202 96928 188 4 1.98 10 0.01 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5567_1.02 (Hsf4)_(Homo_sapiens)_(DBD_1.00) GAANVTTCYAGAA 5.43e-8 1.31e-3 9.42e-1 24181 202 202 96928 321 4 1.98 14 0.01 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0392_1.02 Sp1 GGGGGCGKG 4.98e-8 2.10e-3 1.51e0 42292 202 202 96928 10.2 20 9.90 2191 2.26 17 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2298_1.02 Meis1 NVNDGASTGACAGSW 5.43e-8 2.31e-3 1.66e0 42588 202 202 96928 5.55 37 18.32 6690 6.90 18 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6482_1.02 (Sp3)_(Homo_sapiens)_(DBD_0.97) VGVVGGGGGCGGGGCBRGSS 5.93e-8 3.68e-3 2.65e0 62262 202 202 96928 24.7 68 33.66 17345 17.89 19 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4527_1.02 (Smarcc2)_(Homo_sapiens)_(DBD_1.00) RRACTACAAYTCCCAGVAKGC 8.50e-7 7.98e-3 5.73e0 9419 202 202 96928 1.35e+03 19 9.41 2389 2.46 20 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6127_1.02 Klf2 DGGGYGKGGYB 1.69e-7 9.34e-3 6.71e0 55672 202 202 96928 6.55 52 25.74 11947 12.33 21 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6466_1.02 (Smad4)_(Homo_sapiens)_(DBD_1.00) TGTCTGBCY 1.70e-7 9.52e-3 6.83e0 56249 202 202 96928 6.57 13 6.44 961 0.99 22 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0401_1.02 Sp4 RKGGGCGKN 2.69e-7 1.00e-2 7.19e0 37426 202 202 96928 6 27 13.37 4212 4.35 23 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6553_1.02 (Zfp219)_(Homo_sapiens)_(DBD_1.00) GDGGGGGGYGGA 2.18e-7 1.05e-2 7.52e0 48261 202 202 96928 1.02 136 67.33 47929 49.45 24 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6155_1.02 (Atf6)_(Homo_sapiens)_(DBD_0.98) GBGSTGACGTGG 9.79e-7 1.08e-2 7.74e0 11069 202 202 96928 1.8 31 15.35 5671 5.85 25 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4692_1.02 (Six5)_(Homo_sapiens)_(DBD_1.00) ACTACAAYTC 7.53e-7 1.15e-2 8.28e0 15404 202 202 96928 12.9 22 10.89 3105 3.20 # AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28 # The format of this file is described at http://meme-suite.org/doc/ame-output-format.html. # ame --control ../gencode.vM4.annotation.TSS-500bp.fa -o AME-CISBP_Mus_musculus-gencode.vM4.annotation.TSS-500bp.Orangegenes_Loose ../gencode.vM4.annotation.TSS-500bp.Orangegenes_Loose.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme