rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1552_1.02 Sp110 NNNAGGGVN 5.94e-18 3.54e-13 2.54e-10 59560 77 77 96928 1.27 62 80.52 31480 32.48 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0215_1.02 Hes5 VVCACGTGBB 2.47e-11 3.45e-7 2.48e-4 13974 77 77 96928 2.09 10 12.99 540 0.56 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0414_1.02 Egr3 RCGTGGGYGD 5.40e-10 2.20e-5 1.58e-2 40697 77 77 96928 1.05 57 74.03 37907 39.11 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2298_1.02 Meis1 NVNDGASTGACAGSW 1.26e-9 5.79e-5 4.15e-2 45982 77 77 96928 19.8 11 14.29 1087 1.12 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0221_1.02 Max NCRCGTGNN 3.40e-9 6.60e-5 4.74e-2 19420 77 77 96928 1.81 10 12.99 908 0.94 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0183_1.02 Hey2 GNCACGTGY 8.52e-9 1.05e-4 7.53e-2 12305 77 77 96928 4.43 6 7.79 176 0.18 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0196_1.02 Npas2 NSCACGTGTN 7.18e-9 1.09e-4 7.82e-2 15160 77 77 96928 7.43 5 6.49 77 0.08 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0417_1.02 Egr1 NGMGKGGGYG 4.93e-9 2.26e-4 1.62e-1 45840 77 77 96928 1.18 53 68.83 34881 35.99 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0084_1.02 Tcfap2c HSCCBSAGGS 6.70e-9 2.71e-4 1.94e-1 40429 77 77 96928 1.17 51 66.23 32784 33.82 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4599_1.02 (E2f6)_(Homo_sapiens)_(DBD_0.98) NRGGCGGGARR 6.11e-9 3.04e-4 2.18e-1 49790 77 77 96928 1.74 50 64.94 31554 32.55 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0397_1.02 Zfp263 GGGAGSAC 8.12e-9 3.50e-4 2.51e-1 43080 77 77 96928 1.05 56 72.73 39036 40.27 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6552_1.02 (Zfp148)_(Homo_sapiens)_(DBD_1.00) KGVGKGGGGGAGGGG 7.69e-9 4.54e-4 3.26e-1 59060 77 77 96928 9.9 43 55.84 24194 24.96 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4971_1.02 (Ferd3l)_(Drosophila_melanogaster)_(DBD_0.89) GTVACAGVTG 1.53e-8 6.50e-4 4.67e-1 42439 77 77 96928 9.38 9 11.69 784 0.81 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6123_1.02 Zfp281 GRGKTGGGGGAGGGG 1.64e-8 9.17e-4 6.58e-1 55906 77 77 96928 3.56 54 70.13 37179 38.36 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0404_1.02 Zfp202 NNNKGGGGSV 2.78e-8 1.29e-3 9.29e-1 46638 77 77 96928 1.45 28 36.36 11549 11.92 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4536_1.02 (E2f1)_(Homo_sapiens)_(DBD_0.98) VRRVRGVGCGCGCRS 7.96e-8 2.63e-3 1.89e0 33104 77 77 96928 1.99 40 51.95 22972 23.70 17 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2299_1.02 Myod1 NRNRRCAGCTGSN 7.18e-8 3.16e-3 2.27e0 44078 77 77 96928 7.45 18 23.38 5066 5.23 18 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6535_1.02 (Wt1)_(Homo_sapiens)_(DBD_0.99) GMGGGGGCGKGGG 6.08e-8 3.24e-3 2.33e0 53432 77 77 96928 1.08 64 83.12 52129 53.78 19 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0192_1.02 Hes7 DRCGCGTGBS 3.01e-7 3.32e-3 2.38e0 11048 77 77 96928 1.58 11 14.29 1875 1.93 20 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0083_1.02 Tcfap2b TNSCCYSAGG 9.07e-8 3.39e-3 2.43e0 37411 77 77 96928 1.33 42 54.55 25118 25.91 21 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4640_1.02 (Zbtb7a)_(Homo_sapiens)_(DBD_1.00) GGGSRRGGGKCBSBG 8.20e-8 3.56e-3 2.55e0 43434 77 77 96928 1.75 46 59.74 29312 30.24 22 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0394_1.02 Plagl1 NDGGGGCCMN 1.03e-7 4.26e-3 3.06e0 41598 77 77 96928 1.22 43 55.84 26268 27.10 23 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2317_1.02 Tcf12 RACAGCTGSNV 1.18e-7 4.71e-3 3.38e0 40163 77 77 96928 14 8 10.39 711 0.73 24 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2271_1.02 E2f3 SDSYGVGGGCGGGAR 1.32e-7 5.06e-3 3.63e0 38410 77 77 96928 1.03 53 68.83 37943 39.15 25 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0211_1.02 Mlxip BCACGTGK 4.20e-7 6.22e-3 4.46e0 14862 77 77 96928 3.8 11 14.29 1940 2.00 26 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2391_1.02 (Klf5)_(Homo_sapiens)_(DBD_0.95) DGGGHGGGGC 1.40e-7 8.48e-3 6.09e0 60950 77 77 96928 1.55 63 81.82 51517 53.15 27 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0085_1.02 Tcfap2e THGCCYSVGG 2.24e-7 8.66e-3 6.22e0 38853 77 77 96928 1.47 34 44.16 17983 18.55 28 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6336_1.02 (Maz)_(Homo_sapiens)_(DBD_0.98) RGGGDRGGGAGGGRGGG 1.36e-7 9.02e-3 6.48e0 66384 77 77 96928 21.8 32 41.56 15831 16.33 29 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0175_1.02 Mnt NNCACGTGN 7.03e-7 1.04e-2 7.49e0 14914 77 77 96928 2.34 6 7.79 379 0.39 30 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0082_1.02 Tcfap2a HGCCBBVGGS 3.18e-7 1.33e-2 9.52e0 42025 77 77 96928 1.11 51 66.23 36376 37.53 # AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28 # The format of this file is described at http://meme-suite.org/doc/ame-output-format.html. # ame --control ../gencode.vM4.annotation.TSS-500bp.fa -o AME-CISBP_Mus_musculus-gencode.vM4.annotation.TSS-500bp.MuscleFinalgenes_Loose ../gencode.vM4.annotation.TSS-500bp.MuscleFinalgenes_Loose.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme