rank	motif_DB	motif_ID	motif_alt_ID	consensus	p-value	adj_p-value	E-value	tests	FASTA_max	pos	neg	PWM_min	TP	%TP	FP	%FP
1	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1450_1.02	Nr4a2	TGACCTTT	1.90e-19	9.08e-15	6.52e-12	47921	103	103	96928	11.6	12	11.65	140	0.14
2	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2311_1.02	Rxra	NYTGACCTYTG	2.82e-19	1.33e-14	9.58e-12	47237	103	103	96928	30.9	12	11.65	145	0.15
3	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6535_1.02	(Wt1)_(Homo_sapiens)_(DBD_0.99)	GMGGGGGCGKGGG	5.73e-18	3.20e-13	2.30e-10	55812	103	103	96928	10.2	49	47.57	12247	12.64
4	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6395_1.02	(Nr4a3)_(Homo_sapiens)_(DBD_1.00)	STGACCTTTG	2.62e-17	7.05e-13	5.06e-10	26857	103	103	96928	87.8	11	10.68	147	0.15
5	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6515_1.02	(Tfdp1)_(Homo_sapiens)_(DBD_0.97)	AWWKRGCGGGAAAY	7.74e-15	8.35e-11	5.99e-8	10783	103	103	96928	1.37	36	34.95	7662	7.90
6	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0394_1.02	Plagl1	NDGGGGCCMN	3.86e-15	1.81e-10	1.30e-7	46823	103	103	96928	1.41	61	59.22	22326	23.03
7	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0404_1.02	Zfp202	NNNKGGGGSV	6.00e-14	3.05e-9	2.19e-6	50872	103	103	96928	1.17	76	73.79	36161	37.31
8	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6459_1.02	(Runx3)_(Homo_sapiens)_(DBD_1.00)	AACCRCAAAMCCCV	1.80e-12	5.46e-8	3.92e-5	30437	103	103	96928	30.2	13	12.62	737	0.76
9	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0417_1.02	Egr1	NGMGKGGGYG	1.30e-12	6.47e-8	4.65e-5	49687	103	103	96928	1.1	82	79.61	44056	45.45
10	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5856_1.02	(Sp8)_(Homo_sapiens)_(DBD_1.00)	RGKGGGCGTGGY	1.44e-12	7.38e-8	5.30e-5	51366	103	103	96928	2.52	62	60.19	26058	26.88
11	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6393_1.02	(Nr4a1)_(Homo_sapiens)_(DBD_0.99)	BTGACCTTB	2.20e-12	8.86e-8	6.36e-5	40274	103	103	96928	13.2	12	11.65	580	0.60
12	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0214_1.02	Tcf21	AACAKMTGK	4.58e-12	1.31e-7	9.42e-5	28620	103	103	96928	10	17	16.50	1711	1.77
13	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6221_1.02	(Ets2)_(Homo_sapiens)_(DBD_1.00)	VMVGGAAGTKS	4.07e-12	3.07e-7	2.20e-4	75514	103	103	96928	4.2	20	19.42	2576	2.66
14	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5654_1.02	(Neurog3)_(Homo_sapiens)_(DBD_0.91)	GACATATGTY	2.69e-11	4.15e-7	2.98e-4	15412	103	103	96928	4.74	18	17.48	2218	2.29
15	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5593_1.02	(Klf16)_(Homo_sapiens)_(DBD_0.92)	GGGGGCGTGKC	8.15e-12	4.26e-7	3.06e-4	52229	103	103	96928	1.75	77	74.76	40258	41.53
16	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0414_1.02	Egr3	RCGTGGGYGD	2.21e-11	9.91e-7	7.11e-4	44839	103	103	96928	1.16	72	69.90	36211	37.36
17	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6552_1.02	(Zfp148)_(Homo_sapiens)_(DBD_1.00)	KGVGKGGGGGAGGGG	2.01e-11	1.23e-6	8.84e-4	61081	103	103	96928	2.84	81	78.64	44925	46.35
18	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2391_1.02	(Klf5)_(Homo_sapiens)_(DBD_0.95)	DGGGHGGGGC	2.54e-11	1.60e-6	1.15e-3	62809	103	103	96928	1.74	87	84.47	51682	53.32
19	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0403_1.02	Zfp711	NNDGGCCHNN	1.12e-10	4.28e-6	3.07e-3	38066	103	103	96928	1.1	66	64.08	31981	32.99
20	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0429_1.02	Zfp740	NDKGGGGGGG	1.03e-10	4.45e-6	3.19e-3	43265	103	103	96928	1.04	77	74.76	42047	43.38
21	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6321_1.02	(Klf15)_(Homo_sapiens)_(DBD_1.00)	RSMKGGGAGDKGGGGSS	9.82e-11	5.16e-6	3.71e-3	52587	103	103	96928	1.06	86	83.50	51554	53.19
22	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0421_1.02	Klf8	NGGGYGKGKN	1.16e-10	6.58e-6	4.72e-3	56808	103	103	96928	1.29	73	70.87	38281	39.49
23	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2314_1.02	(Sp2)_(Homo_sapiens)_(DBD_1.00)	SSSVRGRGGCGGGRC	2.34e-10	1.38e-5	9.88e-3	58787	103	103	96928	2.36	79	76.70	44670	46.09
24	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0305_1.02	Creb3l2	GCCACGTGD	1.57e-9	1.60e-5	1.15e-2	10170	103	103	96928	1.28	31	30.10	8848	9.13
25	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1871_1.02	Klf4	DGGGYGKGGC	4.88e-10	2.56e-5	1.84e-2	52446	103	103	96928	1.08	84	81.55	50556	52.16
26	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5962_1.02	(Zbtb7c)_(Homo_sapiens)_(DBD_0.99)	NTCGGTGGTCGY	1.14e-9	2.60e-5	1.86e-2	22716	103	103	96928	3.23	14	13.59	1528	1.58
27	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6482_1.02	(Sp3)_(Homo_sapiens)_(DBD_0.97)	VGVVGGGGGCGGGGCBRGSS	4.37e-10	2.68e-5	1.92e-2	61183	103	103	96928	3.13	79	76.70	45147	46.58
28	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6226_1.02	(Fev)_(Homo_sapiens)_(DBD_1.00)	CAGGAARTDA	5.98e-10	2.78e-5	2.00e-2	46540	103	103	96928	17.2	11	10.68	742	0.77
29	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2312_1.02	Sox3	CCTTTGTYYY	4.12e-10	2.98e-5	2.14e-2	72463	103	103	96928	11.6	32	31.07	8904	9.19
30	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6325_1.02	(Klf6)_(Homo_sapiens)_(DBD_1.00)	GGGGGCKG	7.71e-10	4.04e-5	2.90e-2	52481	103	103	96928	1.44	74	71.84	40620	41.91
31	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1922_1.02	Ets1	VRVRCAGGAAGTGGN	7.03e-10	4.43e-5	3.18e-2	62950	103	103	96928	32.8	12	11.65	969	1.00
32	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0441_1.02	Zic3	CNCHGSRGGN	1.22e-9	5.18e-5	3.72e-2	42610	103	103	96928	1.06	65	63.11	32752	33.79
33	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0439_1.02	Zic2	CNCNGBRGGN	1.55e-9	6.59e-5	4.73e-2	42573	103	103	96928	1.03	71	68.93	38312	39.53
34	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0406_1.02	Zbtb7b	NNRGGGGKCN	1.81e-9	7.85e-5	5.64e-2	43274	103	103	96928	1.14	66	64.08	33911	34.99
35	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1552_1.02	Sp110	NNNAGGGVN	1.51e-9	9.26e-5	6.65e-2	61390	103	103	96928	1.56	39	37.86	13514	13.94
36	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6553_1.02	(Zfp219)_(Homo_sapiens)_(DBD_1.00)	GDGGGGGGYGGA	2.35e-9	1.09e-4	7.83e-2	46497	103	103	96928	2	61	59.22	29821	30.77
37	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0206_1.02	Bhlhe41	NCRCGTGMB	1.59e-8	1.62e-4	1.16e-1	10141	103	103	96928	1.24	21	20.39	4612	4.76
38	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6385_1.02	(Nr1i2)_(Homo_sapiens)_(DBD_0.96)	VTGAMCTYNNTTRACCYHH	5.18e-9	1.69e-4	1.21e-1	32571	103	103	96928	26.9	11	10.68	917	0.95
39	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0405_1.02	Klf7	DGGGCGKGGY	3.86e-9	1.93e-4	1.39e-1	49972	103	103	96928	1.13	77	74.76	44836	46.26
40	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6127_1.02	Klf2	DGGGYGKGGCB	4.17e-9	2.26e-4	1.62e-1	54218	103	103	96928	2.07	67	65.05	35415	36.54
41	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6387_1.02	(Nr1i3)_(Homo_sapiens)_(DBD_0.89)	HTGAACTYBBYTGACCYY	1.02e-8	2.85e-4	2.05e-1	27864	103	103	96928	8.44	18	17.48	3242	3.34
42	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6402_1.02	(Ovol1)_(Homo_sapiens)_(DBD_0.94)	KGTAACKGT	9.48e-9	2.97e-4	2.13e-1	31325	103	103	96928	5.4	16	15.53	2479	2.56
43	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0422_1.02	Zic5	SYRGGGGGTM	7.52e-9	3.13e-4	2.25e-1	41612	103	103	96928	1.02	72	69.90	40484	41.77
44	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0197_1.02	Usf1	NRTCACGTGVN	2.54e-8	3.56e-4	2.56e-1	14031	103	103	96928	12	7	6.80	275	0.28
45	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6432_1.02	(Ppard)_(Homo_sapiens)_(DBD_0.97)	TGACCTTTVNCCTR	9.14e-9	3.73e-4	2.68e-1	40755	103	103	96928	14.3	12	11.65	1224	1.26
46	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0443_1.02	Klf12	DGGGCGKGKY	7.84e-9	3.81e-4	2.74e-1	48615	103	103	96928	1.05	78	75.73	46434	47.91
47	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0225_1.02	Usf2	NTCACGTGNN	3.45e-8	3.89e-4	2.79e-1	11265	103	103	96928	12.8	7	6.80	288	0.30
48	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2276_1.02	Erg	RCAGGAAGTRR	5.61e-9	3.90e-4	2.80e-1	69584	103	103	96928	19.2	13	12.62	1441	1.49
49	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5653_1.02	(Neurog2)_(Homo_sapiens)_(DBD_1.00)	RRCATATGTY	3.35e-8	6.03e-4	4.33e-1	17994	103	103	96928	3.21	21	20.39	4818	4.97
50	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0392_1.02	Sp1	GGGGGCGKG	1.50e-8	6.16e-4	4.42e-1	41078	103	103	96928	1.31	68	66.02	37312	38.49
51	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M4549_1.02	(Nr2c2)_(Homo_sapiens)_(DBD_0.99)	WBYRCTTCCGGGKCR	3.47e-8	6.29e-4	4.52e-1	18127	103	103	96928	23.3	11	10.68	1108	1.14
52	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6430_1.02	(Ppara)_(Homo_sapiens)_(DBD_1.00)	TGACCTY	1.62e-8	7.15e-4	5.13e-1	44002	103	103	96928	4.15	13	12.62	1579	1.63
53	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0175_1.02	Mnt	NNCACGTGN	9.09e-8	1.33e-3	9.56e-1	14657	103	103	96928	1.45	19	18.45	4189	4.32
54	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6358_1.02	(Neurod1)_(Homo_sapiens)_(DBD_1.00)	SGGCAGRTGKSC	3.69e-8	1.40e-3	1.01e0	37987	103	103	96928	4.5	18	17.48	3530	3.64
55	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0221_1.02	Max	NCRCGTGNN	7.27e-8	1.45e-3	1.04e0	19968	103	103	96928	1.48	17	16.50	3277	3.38
56	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1437_1.02	Nr2f6	NDTGACCYYT	5.32e-8	2.00e-3	1.44e0	37649	103	103	96928	4.91	12	11.65	1441	1.49
57	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M4971_1.02	(Ferd3l)_(Drosophila_melanogaster)_(DBD_0.89)	GTVACAGVTG	5.77e-8	2.37e-3	1.70e0	41112	103	103	96928	10.5	8	7.77	477	0.49
58	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2299_1.02	Myod1	NRNRRCAGCTGSN	5.73e-8	2.56e-3	1.84e0	44756	103	103	96928	2.17	53	51.46	25602	26.41
59	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0196_1.02	Npas2	NSCACGTGTN	1.85e-7	2.74e-3	1.97e0	14786	103	103	96928	1.29	31	30.10	10869	11.21
60	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M4599_1.02	(E2f6)_(Homo_sapiens)_(DBD_0.98)	NRGGCGGGARR	8.42e-8	4.33e-3	3.11e0	51549	103	103	96928	1.36	71	68.93	41550	42.87
61	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0084_1.02	Tcfap2c	HSCCBSAGGS	1.08e-7	4.81e-3	3.45e0	44574	103	103	96928	1.04	72	69.90	42728	44.08
62	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2274_1.02	Egr2	GKGYGTGGGYGKRDS	1.20e-7	6.06e-3	4.35e0	50534	103	103	96928	1.77	67	65.05	38119	39.33
63	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0412_1.02	Zic1	CNCMRCRGGN	1.43e-7	6.11e-3	4.39e0	42753	103	103	96928	1.03	68	66.02	39193	40.44
64	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0181_1.02	Mlx	NNNCACGTG	3.81e-7	6.40e-3	4.59e0	16827	103	103	96928	3.11	7	6.80	414	0.43
65	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0401_1.02	Sp4	RKGGGCGKN	1.96e-7	7.17e-3	5.15e0	36658	103	103	96928	1.7	56	54.37	28953	29.87
66	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1442_1.02	Rarb	NGTGACCTYK	2.44e-7	8.18e-3	5.87e0	33708	103	103	96928	3.34	28	27.18	9209	9.50
67	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2271_1.02	E2f3	SDSYGVGGGCGGGAR	2.68e-7	1.10e-2	7.87e0	41090	103	103	96928	3.86	40	38.83	16974	17.51
68	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6109_1.02	Vdr	GRGTTCAYHGGGTTCA	1.98e-6	1.32e-2	9.51e0	6743	103	103	96928	2.49	15	14.56	3254	3.36

# AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28
# The format of this file is described at http://meme-suite.org/doc/ame-output-format.html.
# ame --control ../gencode.vM4.annotation.TSS-500bp.fa -o AME-CISBP_Mus_musculus-gencode.vM4.annotation.TSS-500bp.LateMuscleFinalgenes_Loose ../gencode.vM4.annotation.TSS-500bp.LateMuscleFinalgenes_Loose.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme