rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5591_1.02 (Klf13)_(Homo_sapiens)_(DBD_0.99) CAAAAAGGGGCGTGKCAY 6.28e-17 5.92e-13 4.25e-10 9424 245 245 96928 447 12 4.90 91 0.09 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2276_1.02 Erg RCAGGAAGTRR 2.26e-11 1.54e-6 1.11e-3 68135 245 245 96928 9.94 45 18.37 5804 5.99 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2294_1.02 Klf1 WGGGTGTGGYH 6.80e-11 3.31e-6 2.37e-3 48631 245 245 96928 1.91 119 48.57 27984 28.87 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1443_1.02 Hnf4a NNTGRMCYYN 8.10e-11 3.97e-6 2.85e-3 48935 245 245 96928 1.01 165 67.35 45404 46.84 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4526_1.02 (Smarcc1)_(Homo_sapiens)_(DBD_1.00) DSRVDGTGASTCABV 2.53e-10 5.28e-6 3.79e-3 20886 245 245 96928 51.6 6 2.45 27 0.03 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1968_1.02 (Ebf1)_(Homo_sapiens)_(DBD_1.00) TCCCWGGGGRV 1.34e-10 5.89e-6 4.23e-3 43797 245 245 96928 1.22 144 58.78 37379 38.56 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0397_1.02 Zfp263 GGGAGSAC 3.09e-10 1.57e-5 1.13e-2 50831 245 245 96928 1.37 115 46.94 27220 28.08 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5209_1.02 (Sp5)_(Drosophila_melanogaster)_(DBD_0.93) GKGGGCGKRKC 1.62e-9 7.24e-5 5.20e-2 44550 245 245 96928 9.68 41 16.73 5681 5.86 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6123_1.02 Zfp281 GRGKTGGGGGAGGGG 1.88e-9 1.14e-4 8.19e-2 60583 245 245 96928 2.13 172 70.20 49864 51.44 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6552_1.02 (Zfp148)_(Homo_sapiens)_(DBD_1.00) KGVGKGGGGGAGGGG 2.03e-9 1.30e-4 9.36e-2 64164 245 245 96928 7.39 134 54.69 34894 36.00 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0443_1.02 Klf12 DGGGYGKGKY 2.81e-9 1.49e-4 1.07e-1 53097 245 245 96928 6.83 11 4.49 350 0.36 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1871_1.02 Klf4 DGGGYGKGGC 4.82e-9 2.72e-4 1.95e-1 56469 245 245 96928 1.57 159 64.90 45010 46.44 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0406_1.02 Zbtb7b NNRGGGGKCN 1.02e-8 5.05e-4 3.63e-1 49631 245 245 96928 1.53 96 39.18 22247 22.95 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6127_1.02 Klf2 DGGGYGKGGYB 1.55e-8 8.94e-4 6.42e-1 57863 245 245 96928 1.49 164 66.94 47667 49.18 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2318_1.02 Tcf3 SMCAGCTGCHB 1.84e-8 9.04e-4 6.49e-1 49240 245 245 96928 1.05 164 66.94 47762 49.28 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2391_1.02 (Klf5)_(Homo_sapiens)_(DBD_0.95) DGGGHGGGGC 2.04e-8 1.34e-3 9.59e-1 65431 245 245 96928 1.2 197 80.41 62150 64.12 17 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0404_1.02 Zfp202 NNNKGGGGSV 3.14e-8 1.77e-3 1.27e0 56492 245 245 96928 1.64 79 32.24 17199 17.74 18 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5627_1.02 (Mesp2)_(Homo_sapiens)_(DBD_0.98) NVCAGGTGYD 3.96e-8 1.87e-3 1.34e0 47289 245 245 96928 1.01 160 65.31 46557 48.03 19 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0405_1.02 Klf7 DGGGCGKGGY 3.58e-8 1.94e-3 1.40e0 54297 245 245 96928 7.79 11 4.49 452 0.47 20 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0421_1.02 Klf8 NGGGYGKGKN 4.23e-8 2.56e-3 1.84e0 60590 245 245 96928 1.14 174 71.02 52398 54.06 21 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0083_1.02 Tcfap2b TNSCCYSAGG 7.01e-8 3.28e-3 2.36e0 46883 245 245 96928 4.28 20 8.16 1832 1.89 22 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0422_1.02 Zic5 SYRGGGGGTM 1.02e-7 4.99e-3 3.58e0 49055 245 245 96928 1.06 157 64.08 45882 47.34 23 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2274_1.02 Egr2 GKGYGTGGGYGKRDS 9.40e-8 5.06e-3 3.64e0 54019 245 245 96928 1.29 164 66.94 48684 50.23 24 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6267_1.02 (Glis3)_(Homo_sapiens)_(DBD_0.98) GYGGGGGGTM 1.54e-7 5.60e-3 4.02e0 36493 245 245 96928 11.9 7 2.86 147 0.15 25 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6464_1.02 (Smad2)_(Homo_sapiens)_(DBD_0.99) GTGTCHGKCTV 1.23e-7 6.12e-3 4.39e0 50079 245 245 96928 2.01 81 33.06 18390 18.97 26 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5856_1.02 (Sp8)_(Homo_sapiens)_(DBD_1.00) RGKGGGCGTGGY 1.21e-7 6.66e-3 4.78e0 55107 245 245 96928 10.2 36 14.69 5386 5.56 27 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6336_1.02 (Maz)_(Homo_sapiens)_(DBD_0.98) RGGGDRGGGAGGGRGGG 9.67e-8 6.75e-3 4.85e0 70103 245 245 96928 1.03 211 86.12 69697 71.91 28 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1552_1.02 Sp110 NNNAGGGVN 1.12e-7 7.21e-3 5.17e0 64550 245 245 96928 1.11 182 74.29 56397 58.18 29 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0398_1.02 Zscan10 NGKRAGTGCNN 3.67e-7 1.07e-2 7.67e0 29267 245 245 96928 1.01 111 45.31 29138 30.06 30 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0401_1.02 Sp4 RKGGGCGKN 3.36e-7 1.29e-2 9.26e0 38615 245 245 96928 6.62 33 13.47 4881 5.04 31 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6221_1.02 (Ets2)_(Homo_sapiens)_(DBD_1.00) VMVGGAAGTKS 1.84e-7 1.36e-2 9.78e0 74511 245 245 96928 2.09 100 40.82 24920 25.71 # AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28 # The format of this file is described at http://meme-suite.org/doc/ame-output-format.html. # ame --control ../gencode.vM4.annotation.TSS-500bp.fa -o AME-CISBP_Mus_musculus-gencode.vM4.annotation.TSS-500bp.ImmuneFinalGenes ../gencode.vM4.annotation.TSS-500bp.ImmuneFinalGenes.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme