rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5487_1.02 (Gcm2)_(Homo_sapiens)_(DBD_0.92) BATGCGGGTR 1.45e-13 2.20e-9 1.58e-6 15172 101 101 96928 12 6 5.94 18 0.02 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1360_1.02 Prdm11 NNHCCGCAAW 7.31e-13 3.03e-9 2.18e-6 4149 101 101 96928 1.22 16 15.84 1310 1.35 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6194_1.02 (E2f5)_(Homo_sapiens)_(DBD_0.99) SGCGCSAAAH 3.21e-10 2.01e-6 1.44e-3 6251 101 101 96928 11.8 9 8.91 374 0.39 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1442_1.02 Rarb NGTGACCTYK 4.43e-10 1.50e-5 1.08e-2 33809 101 101 96928 7.37 12 11.88 949 0.98 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6109_1.02 Vdr GRGTTCAYHGGGTTCA 2.43e-9 1.55e-5 1.11e-2 6365 101 101 96928 3.53 16 15.84 2296 2.37 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1359_1.02 Mypop NWTTGCGCCR 2.85e-9 1.84e-5 1.32e-2 6460 101 101 96928 2.83 12 11.88 1123 1.16 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0310_1.02 Cebpe TTGCRHAA 8.70e-10 2.11e-5 1.51e-2 24247 101 101 96928 4.59 8 7.92 280 0.29 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2314_1.02 (Sp2)_(Homo_sapiens)_(DBD_1.00) SSVVRGRGGCGGGRC 1.11e-9 6.91e-5 4.96e-2 62455 101 101 96928 49.9 25 24.75 5829 6.01 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0812_1.02 Gcm1 NATRCGGGY 2.09e-9 8.28e-5 5.94e-2 39654 101 101 96928 1.36 34 33.66 10885 11.23 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6267_1.02 (Glis3)_(Homo_sapiens)_(DBD_0.98) GYGGGGGGTM 2.13e-9 8.32e-5 5.98e-2 39153 101 101 96928 3.67 23 22.77 5078 5.24 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5805_1.02 (Scrt2)_(Homo_sapiens)_(DBD_0.99) RWGCAACAGGTGB 7.71e-9 9.04e-5 6.49e-2 11735 101 101 96928 100 6 5.94 130 0.13 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0407_1.02 Mtf1 CGTGYGCAM 2.09e-8 1.68e-4 1.20e-1 8038 101 101 96928 1.27 23 22.77 5742 5.92 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6265_1.02 (Gli2)_(Homo_sapiens)_(DBD_0.99) GTGGGTGGTCY 1.14e-8 1.97e-4 1.41e-1 17260 101 101 96928 45.7 9 8.91 569 0.59 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6264_1.02 (Gli1)_(Homo_sapiens)_(DBD_0.99) BTGGGTGGTCY 1.50e-8 4.52e-4 3.24e-1 30044 101 101 96928 18.3 9 8.91 588 0.61 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6287_1.02 (Hsf2)_(Homo_sapiens)_(DBD_0.98) VGAABRTTCTAGAA 1.32e-8 4.77e-4 3.42e-1 36125 101 101 96928 17.5 9 8.91 579 0.60 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5962_1.02 (Zbtb7c)_(Homo_sapiens)_(DBD_0.99) NTCGGTGGTCGY 1.83e-8 5.31e-4 3.81e-1 28970 101 101 96928 3.73 13 12.87 1629 1.68 17 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6552_1.02 (Zfp148)_(Homo_sapiens)_(DBD_1.00) KGVGKGGGGGAGGGG 1.06e-8 6.89e-4 4.95e-1 65084 101 101 96928 7.04 67 66.34 37074 38.25 18 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6120_1.02 Gli3 STGGGTGGTCY 2.35e-8 6.98e-4 5.01e-1 29786 101 101 96928 8.86 15 14.85 2336 2.41 19 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6515_1.02 (Tfdp1)_(Homo_sapiens)_(DBD_0.97) AWWKRGCGGGAAAY 1.22e-7 1.42e-3 1.02e0 11657 101 101 96928 2.45 19 18.81 4361 4.50 20 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6321_1.02 (Klf15)_(Homo_sapiens)_(DBD_1.00) RSMKGGGAGDKGGGGSS 3.42e-8 1.98e-3 1.42e0 57911 101 101 96928 6.37 51 50.50 24253 25.02 21 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1966_1.02 Nfe2l2 MASNATGACTCAGCA 1.21e-7 2.08e-3 1.50e0 17292 101 101 96928 87.5 6 5.94 210 0.22 22 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4930_1.02 (Npas4)_(Drosophila_melanogaster)_(DBD_0.61) RADTCGTGACT 3.92e-7 2.16e-3 1.55e0 5528 101 101 96928 3.9 9 8.91 870 0.90 23 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1915_1.02 (Zfp523)_(Xenopus_laevis)_(DBD_0.84) KCRWKGMATBMTGGGARDTV 1.05e-7 2.48e-3 1.78e0 23645 101 101 96928 313 6 5.94 205 0.21 24 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5804_1.02 (Scrt1)_(Homo_sapiens)_(DBD_1.00) RWGCAACAGGTGKBH 2.43e-7 3.08e-3 2.21e0 12692 101 101 96928 13.9 10 9.90 1084 1.12 25 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6553_1.02 (Zfp219)_(Homo_sapiens)_(DBD_1.00) GDGGGGGGYGGA 7.65e-8 4.00e-3 2.87e0 52443 101 101 96928 35.6 9 8.91 714 0.74 26 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5567_1.02 (Hsf4)_(Homo_sapiens)_(DBD_1.00) GAANVTTCYAGAA 2.11e-7 4.49e-3 3.23e0 21338 101 101 96928 50 9 8.91 807 0.83 27 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6330_1.02 (Mafa)_(Homo_sapiens)_(DBD_1.00) STGCTGACBMYGCARYHTYCV 1.25e-7 5.34e-3 3.83e0 42793 101 101 96928 1.88 47 46.53 22044 22.74 28 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5980_1.02 (Zfp784)_(Homo_sapiens)_(DBD_0.98) AGGTAGGTAC 5.51e-7 6.14e-3 4.41e0 11169 101 101 96928 98.1 4 3.96 57 0.06 29 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6420_1.02 (Plag1)_(Homo_sapiens)_(DBD_0.96) GGRGGSMHNWVKAGGGG 1.29e-7 7.05e-3 5.06e0 54962 101 101 96928 6.84 33 32.67 12189 12.58 30 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4473_1.02 (Pbx3)_(Homo_sapiens)_(DBD_1.00) NBCDGCCAATSRGVR 2.89e-7 7.51e-3 5.40e0 26137 101 101 96928 22 7 6.93 405 0.42 31 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1437_1.02 Nr2f6 NDTGACCYYT 2.08e-7 7.63e-3 5.48e0 36873 101 101 96928 8.2 4 3.96 44 0.05 32 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6393_1.02 (Nr4a1)_(Homo_sapiens)_(DBD_0.99) BTGACCTTB 2.26e-7 8.42e-3 6.05e0 37422 101 101 96928 17.9 4 3.96 45 0.05 33 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6346_1.02 (Mlxipl)_(Homo_sapiens)_(DBD_1.00) VCACGVSGKKGBCMCRTGC 9.42e-7 9.54e-3 6.85e0 10178 101 101 96928 3.34 15 14.85 3127 3.23 # AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28 # The format of this file is described at http://meme-suite.org/doc/ame-output-format.html. # ame --control ../gencode.vM4.annotation.TSS-500bp.fa -o AME-CISBP_Mus_musculus-gencode.vM4.annotation.TSS-500bp.Greengenes_Loose ../gencode.vM4.annotation.TSS-500bp.Greengenes_Loose.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme