rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6553_1.02 (Zfp219)_(Homo_sapiens)_(DBD_1.00) GDGGGGGGYGGA 2.78e-16 1.09e-11 7.84e-9 39276 26 26 96928 19.4 9 34.62 341 0.35 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0407_1.02 Mtf1 CGTGYGCAM 2.83e-14 1.63e-10 1.17e-7 5770 26 26 96928 16.6 8 30.77 328 0.34 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6267_1.02 (Glis3)_(Homo_sapiens)_(DBD_0.98) GYGGGGGGTM 7.67e-14 1.69e-9 1.22e-6 22104 26 26 96928 2.48 14 53.85 3658 3.77 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2314_1.02 (Sp2)_(Homo_sapiens)_(DBD_1.00) SSSVRGRGGCGGGRC 1.43e-13 7.75e-9 5.57e-6 54236 26 26 96928 23.7 13 50.00 2952 3.05 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0405_1.02 Klf7 DGGGCGKGGY 5.46e-13 2.34e-8 1.68e-5 42853 26 26 96928 3.89 9 34.62 805 0.83 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6346_1.02 (Mlxipl)_(Homo_sapiens)_(DBD_1.00) VCACGVSGKKGBCMCRTGC 4.19e-12 3.40e-8 2.44e-5 8108 26 26 96928 4.82 10 38.46 1530 1.58 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6155_1.02 (Atf6)_(Homo_sapiens)_(DBD_0.98) GBGSTGACGTGG 3.68e-12 3.42e-8 2.45e-5 9279 26 26 96928 2.56 12 46.15 2917 3.01 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0421_1.02 Klf8 NGGGYGKGKN 1.62e-12 8.44e-8 6.06e-5 52233 26 26 96928 1.85 14 53.85 4586 4.73 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0443_1.02 Klf12 DGGGCGKGKY 4.70e-12 1.95e-7 1.40e-4 41506 26 26 96928 3.23 9 34.62 1028 1.06 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6552_1.02 (Zfp148)_(Homo_sapiens)_(DBD_1.00) KGVGKGGGGGAGGGG 5.90e-12 3.34e-7 2.40e-4 56672 26 26 96928 40.9 15 57.69 6282 6.48 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6321_1.02 (Klf15)_(Homo_sapiens)_(DBD_1.00) RSMKGGGAGDKGGGGSS 1.86e-11 8.58e-7 6.16e-4 46042 26 26 96928 7.87 16 61.54 8277 8.54 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6482_1.02 (Sp3)_(Homo_sapiens)_(DBD_0.97) VGVVGGGGGCGGGGCBRGSS 4.17e-11 2.38e-6 1.71e-3 57082 26 26 96928 34.7 13 50.00 4650 4.80 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0082_1.02 Tcfap2a HGCCBBVGGS 6.85e-11 2.53e-6 1.82e-3 37003 26 26 96928 1.82 13 50.00 4840 4.99 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0192_1.02 Hes7 DVCGCGTGBS 3.69e-10 3.16e-6 2.27e-3 8557 26 26 96928 1.28 11 42.31 3318 3.42 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6432_1.02 (Ppard)_(Homo_sapiens)_(DBD_0.97) TGACCTTTVNCCTR 1.27e-10 6.18e-6 4.44e-3 48626 26 26 96928 11.5 10 38.46 2176 2.24 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2309_1.02 (Rfx5)_(Homo_sapiens)_(DBD_0.99) BCTGTTGCYAKGSVR 3.30e-10 1.05e-5 7.57e-3 31922 26 26 96928 10.9 10 38.46 2403 2.48 17 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5497_1.02 (Grhl1)_(Homo_sapiens)_(DBD_0.84) AACCGGTYTAACCGGTT 2.30e-9 2.43e-5 1.74e-2 10557 26 26 96928 7.8 8 30.77 1392 1.44 18 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6535_1.02 (Wt1)_(Homo_sapiens)_(DBD_0.99) GMGGGGGCGKGGG 5.01e-10 2.53e-5 1.81e-2 50431 26 26 96928 17 9 34.62 1753 1.81 19 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4536_1.02 (E2f1)_(Homo_sapiens)_(DBD_0.98) VRRVRGVGCGCGCRS 1.74e-9 5.23e-5 3.76e-2 30038 26 26 96928 6.33 12 46.15 4996 5.15 20 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1453_1.02 Rorb NNTGACCYM 2.19e-9 8.57e-5 6.16e-2 39151 26 26 96928 2.79 9 34.62 2078 2.14 21 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0422_1.02 Zic5 SYRGGGGGTM 4.02e-9 1.15e-4 8.23e-2 28509 26 26 96928 1.33 15 57.69 9990 10.31 22 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0191_1.02 Hes1 VVCACGYGNN 2.70e-8 2.20e-4 1.58e-1 8143 26 26 96928 1.15 10 38.46 3818 3.94 23 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1871_1.02 Klf4 DGGGYGKGGC 5.98e-9 2.75e-4 1.97e-1 45974 26 26 96928 6.23 13 50.00 6978 7.20 24 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2391_1.02 (Klf5)_(Homo_sapiens)_(DBD_0.95) DGGGHGGGGC 6.10e-9 3.57e-4 2.57e-1 58552 26 26 96928 7.56 13 50.00 6990 7.21 25 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1442_1.02 Rarb NGTGACCTYK 1.84e-8 6.43e-4 4.62e-1 34988 26 26 96928 6.81 9 34.62 2661 2.75 26 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0392_1.02 Sp1 GGGGGCGKG 3.70e-8 1.34e-3 9.62e-1 36175 26 26 96928 3.13 15 57.69 11747 12.12 27 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6127_1.02 Klf2 DGGGYGKGGCB 2.90e-8 1.41e-3 1.01e0 48578 26 26 96928 5.49 13 50.00 7959 8.21 28 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2286_1.02 (Hnf4g)_(Homo_sapiens)_(DBD_1.00) TGRMCTTTGNHCYYN 3.81e-8 2.11e-3 1.52e0 55536 26 26 96928 3.25 18 69.23 18559 19.15 29 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0084_1.02 Tcfap2c HSCCBSAGGS 7.12e-8 2.51e-3 1.80e0 35315 26 26 96928 1.83 12 46.15 6968 7.19 30 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0429_1.02 Zfp740 NDKGGGGGGG 8.62e-8 3.10e-3 2.23e0 36023 26 26 96928 2.48 15 57.69 12503 12.90 31 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0215_1.02 Hes5 VVCACGTGBB 2.74e-7 3.10e-3 2.23e0 11354 26 26 96928 1.18 11 42.31 6304 6.50 32 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6273_1.02 (Hey1)_(Homo_sapiens)_(DBD_0.95) GBBGGCWCGTGGCHTBV 2.57e-7 3.35e-3 2.41e0 13060 26 26 96928 3.76 8 30.77 2577 2.66 33 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6201_1.02 (Egr4)_(Homo_sapiens)_(DBD_1.00) GGSGGYRGGGM 8.64e-8 3.39e-3 2.43e0 39317 26 26 96928 4.51 16 61.54 14656 15.12 34 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1455_1.02 Rxrb DTGACCYY 8.67e-8 3.41e-3 2.45e0 39396 26 26 96928 1.36 21 80.77 28485 29.39 35 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6123_1.02 Zfp281 GRGKKGGGGGAGGGG 1.13e-7 6.04e-3 4.34e0 53589 26 26 96928 9.05 19 73.08 22620 23.34 36 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5593_1.02 (Klf16)_(Homo_sapiens)_(DBD_0.92) GGGGGCGTGKC 1.35e-7 6.25e-3 4.49e0 46310 26 26 96928 5.01 14 53.85 10912 11.26 37 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6325_1.02 (Klf6)_(Homo_sapiens)_(DBD_1.00) GGGGGCKG 2.05e-7 9.10e-3 6.54e0 44560 26 26 96928 3.86 9 34.62 3536 3.65 # AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28 # The format of this file is described at http://meme-suite.org/doc/ame-output-format.html. # ame --control ../gencode.vM4.annotation.TSS-500bp.fa -o AME-CISBP_Mus_musculus-gencode.vM4.annotation.TSS-500bp.GreenGenes ../gencode.vM4.annotation.TSS-500bp.GreenGenes.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme