rank	motif_DB	motif_ID	motif_alt_ID	consensus	p-value	adj_p-value	E-value	tests	FASTA_max	pos	neg	PWM_min	TP	%TP	FP	%FP
1	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2317_1.02	Tcf12	RACAGCTGSNV	1.14e-33	4.84e-29	3.47e-26	42554	373	373	96928	4.67	137	36.73	11858	12.23
2	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2299_1.02	Myod1	NRNRRCAGCTGSN	1.86e-32	8.78e-28	6.30e-25	47141	373	373	96928	2.42	204	54.69	24901	25.69
3	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2300_1.02	Myog	RRCAGCTGSNV	3.15e-32	1.39e-27	1.00e-24	44264	373	373	96928	3.59	167	44.77	17553	18.11
4	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0178_1.02	Ascl2	NVCAGCTGBN	9.69e-28	6.02e-23	4.32e-20	62111	373	373	96928	2	160	42.90	17792	18.36
5	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2318_1.02	Tcf3	SMCAGCTGCHB	5.51e-20	2.76e-15	1.98e-12	50105	373	373	96928	1.29	250	67.02	42161	43.50
6	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M4971_1.02	(Ferd3l)_(Drosophila_melanogaster)_(DBD_0.89)	GTVACAGVTG	3.48e-18	1.41e-13	1.01e-10	40478	373	373	96928	2.15	130	34.85	15840	16.34
7	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6336_1.02	(Maz)_(Homo_sapiens)_(DBD_0.98)	RGGGDRGGGAGGGRGGG	5.18e-18	3.66e-13	2.63e-10	70739	373	373	96928	2.4	299	80.16	57341	59.16
8	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0203_1.02	Figla	VCASSTGNN	2.58e-17	1.38e-12	9.94e-10	53696	373	373	96928	1.03	278	74.53	51616	53.25
9	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0216_1.02	Nhlh2	NGCAGCTGYN	1.04e-16	5.32e-12	3.82e-9	50923	373	373	96928	1.86	152	40.75	21006	21.67
10	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6123_1.02	Zfp281	GRGKTGGGGGAGGGG	1.47e-16	9.05e-12	6.50e-9	61383	373	373	96928	4.49	235	63.00	40493	41.78
11	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6321_1.02	(Klf15)_(Homo_sapiens)_(DBD_1.00)	RSMKGGGAGDKGGGGSS	2.91e-16	1.68e-11	1.20e-8	57524	373	373	96928	3.48	210	56.30	34440	35.53
12	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0176_1.02	Tcfap4	MCAKMTGDY	4.35e-16	2.32e-11	1.67e-8	53392	373	373	96928	1.02	274	73.46	51348	52.98
13	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6358_1.02	(Neurod1)_(Homo_sapiens)_(DBD_1.00)	SGGCAGRTGKSC	6.42e-16	2.71e-11	1.95e-8	42265	373	373	96928	1.41	187	50.13	29203	30.13
14	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6552_1.02	(Zfp148)_(Homo_sapiens)_(DBD_1.00)	KGVGKGGGGGAGGGG	1.43e-15	9.27e-11	6.66e-8	64944	373	373	96928	6.72	219	58.71	37120	38.30
15	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0429_1.02	Zfp740	NDKGGGGGGG	6.85e-15	3.41e-10	2.45e-7	49829	373	373	96928	1.23	238	63.81	42447	43.79
16	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0219_1.02	Tcf4	VCAGGTGBN	6.25e-15	3.91e-10	2.81e-7	62544	373	373	96928	1.22	248	66.49	45054	46.48
17	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0209_1.02	Myf6	NCANCTGWY	1.75e-14	1.07e-9	7.72e-7	61509	373	373	96928	1.45	98	26.27	11424	11.79
18	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6420_1.02	(Plag1)_(Homo_sapiens)_(DBD_0.96)	GGRGGSMHNWVKAGGGG	1.44e-13	7.86e-9	5.64e-6	54548	373	373	96928	1.49	243	65.15	44759	46.18
19	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0406_1.02	Zbtb7b	NNRGGGGKCN	2.03e-13	1.04e-8	7.50e-6	51493	373	373	96928	1.67	134	35.92	19044	19.65
20	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1968_1.02	(Ebf1)_(Homo_sapiens)_(DBD_1.00)	TCCCWGGGGRV	2.51e-13	1.12e-8	8.05e-6	44723	373	373	96928	2.36	141	37.80	20577	21.23
21	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5571_1.02	(Id4)_(Homo_sapiens)_(DBD_1.00)	DVCAGGTGYN	2.86e-13	1.13e-8	8.11e-6	39539	373	373	96928	1.02	219	58.71	38786	40.02
22	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0417_1.02	Egr1	NGMGKGGGYG	6.14e-13	3.45e-8	2.48e-5	56183	373	373	96928	1.01	281	75.34	55772	57.54
23	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0404_1.02	Zfp202	NNNKGGGGSV	1.40e-12	8.14e-8	5.84e-5	58047	373	373	96928	1.39	193	51.74	32902	33.94
24	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M4467_1.02	(Mef2c)_(Homo_sapiens)_(DBD_1.00)	NDKCYAAAAATAGMH	1.76e-12	9.30e-8	6.68e-5	53008	373	373	96928	32.6	22	5.90	793	0.82
25	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6463_1.02	(Smad1)_(Homo_sapiens)_(DBD_1.00)	RSCCTGTCTGCC	2.40e-12	1.41e-7	1.01e-4	58905	373	373	96928	1.19	263	70.51	51164	52.79
26	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M4466_1.02	(Mef2a)_(Homo_sapiens)_(DBD_1.00)	NDKCYAAAAATAGMH	1.93e-11	1.04e-6	7.47e-4	53957	373	373	96928	34.2	23	6.17	995	1.03
27	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0422_1.02	Zic5	SYRGGGGGTM	2.07e-11	1.05e-6	7.56e-4	50956	373	373	96928	1.31	197	52.82	34778	35.88
28	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6432_1.02	(Ppard)_(Homo_sapiens)_(DBD_0.97)	TGACCTTTVNCCTR	2.91e-11	1.11e-6	7.95e-4	38086	373	373	96928	3.03	81	21.72	9735	10.04
29	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1552_1.02	Sp110	NNNAGGGVN	1.76e-11	1.16e-6	8.31e-4	65562	373	373	96928	1.41	199	53.35	35213	36.33
30	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5593_1.02	(Klf16)_(Homo_sapiens)_(DBD_0.92)	GGGGGCGTGKC	3.89e-11	2.20e-6	1.58e-3	56680	373	373	96928	2.15	223	59.79	41526	42.84
31	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0412_1.02	Zic1	CNCMRCRGGN	6.42e-11	3.31e-6	2.38e-3	51545	373	373	96928	1.07	236	63.27	45097	46.53
32	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6201_1.02	(Egr4)_(Homo_sapiens)_(DBD_1.00)	GGSGGYRGGGM	7.12e-11	3.62e-6	2.60e-3	50829	373	373	96928	1.9	219	58.71	40727	42.02
33	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6267_1.02	(Glis3)_(Homo_sapiens)_(DBD_0.98)	GYGGGGGGTM	1.08e-10	4.12e-6	2.96e-3	38323	373	373	96928	1.46	147	39.41	23622	24.37
34	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6535_1.02	(Wt1)_(Homo_sapiens)_(DBD_0.99)	GMGGGGGCGKGGG	7.93e-11	4.76e-6	3.42e-3	60053	373	373	96928	1.24	278	74.53	56710	58.51
35	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5889_1.02	(Tbx21)_(Homo_sapiens)_(DBD_0.98)	GGTGTGAHWTCACACC	1.01e-9	7.66e-6	5.50e-3	7570	373	373	96928	982	5	1.34	8	0.01
36	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0439_1.02	Zic2	CNCNGBRGGN	1.55e-10	7.96e-6	5.71e-3	51481	373	373	96928	1.07	230	61.66	43862	45.25
37	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6325_1.02	(Klf6)_(Homo_sapiens)_(DBD_1.00)	GGGGGCKG	1.43e-10	8.31e-6	5.96e-3	58131	373	373	96928	1	281	75.34	57804	59.64
38	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0394_1.02	Plagl1	NDGGGGCCMN	1.63e-10	8.98e-6	6.45e-3	55118	373	373	96928	1.13	244	65.42	47582	49.09
39	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5616_1.02	(Mef2b)_(Homo_sapiens)_(DBD_0.96)	RCTAWAAATAGC	9.51e-10	1.27e-5	9.15e-3	13392	373	373	96928	6.55	42	11.26	3733	3.85
40	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5856_1.02	(Sp8)_(Homo_sapiens)_(DBD_1.00)	RGKGGGCGTGGY	3.41e-10	1.92e-5	1.38e-2	56185	373	373	96928	2.09	202	54.16	37033	38.21
41	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6482_1.02	(Sp3)_(Homo_sapiens)_(DBD_0.97)	VGVVGGGGGCGGGGCBRGSS	3.08e-10	1.99e-5	1.43e-2	64577	373	373	96928	1.44	288	77.21	60145	62.05
42	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0441_1.02	Zic3	CNCHGSRGGN	4.39e-10	2.26e-5	1.63e-2	51536	373	373	96928	1.09	217	58.18	40913	42.21
43	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2391_1.02	(Klf5)_(Homo_sapiens)_(DBD_0.95)	DGGGHGGGGC	4.61e-10	3.05e-5	2.19e-2	66157	373	373	96928	2.24	255	68.36	50973	52.59
44	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6464_1.02	(Smad2)_(Homo_sapiens)_(DBD_0.99)	GTGTCHGKCTV	1.80e-9	9.23e-5	6.62e-2	51239	373	373	96928	1.04	247	66.22	49362	50.93
45	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6342_1.02	(Mef2d)_(Homo_sapiens)_(DBD_1.00)	BCTAWAAATAGC	3.09e-9	1.02e-4	7.34e-2	33068	373	373	96928	17.2	26	6.97	1657	1.71
46	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2314_1.02	(Sp2)_(Homo_sapiens)_(DBD_1.00)	SSVVRGRGGCGGGRC	1.86e-9	1.16e-4	8.33e-2	62269	373	373	96928	2.66	240	64.34	47500	49.01
47	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M4640_1.02	(Zbtb7a)_(Homo_sapiens)_(DBD_1.00)	GGGSRRGGGKCBSBG	2.23e-9	1.18e-4	8.50e-2	53002	373	373	96928	1.13	250	67.02	50264	51.86
48	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5627_1.02	(Mesp2)_(Homo_sapiens)_(DBD_0.98)	NVCAGGTGYD	3.18e-9	1.53e-4	1.10e-1	48286	373	373	96928	1.14	212	56.84	40432	41.71
49	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2274_1.02	Egr2	GKGYGTGGGYGKRDS	2.82e-9	1.56e-4	1.12e-1	55175	373	373	96928	1.02	266	71.31	54766	56.50
50	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6553_1.02	(Zfp219)_(Homo_sapiens)_(DBD_1.00)	GDGGGGGGYGGA	3.22e-9	1.67e-4	1.20e-1	51947	373	373	96928	7.16	89	23.86	12326	12.72
51	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0393_1.02	Glis2	NHGRGGGGTCN	5.22e-9	1.73e-4	1.24e-1	33103	373	373	96928	1.04	176	47.18	31724	32.73
52	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6466_1.02	(Smad4)_(Homo_sapiens)_(DBD_1.00)	TGTCTGBCY	3.90e-9	2.17e-4	1.56e-1	55502	373	373	96928	1.04	260	69.71	53238	54.93
53	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2298_1.02	Meis1	NVNDGASTGACAGSW	2.32e-8	9.62e-4	6.90e-1	41513	373	373	96928	2.78	100	26.81	15115	15.59
54	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1443_1.02	Hnf4a	NNTGRMCYYN	2.01e-8	9.79e-4	7.03e-1	48670	373	373	96928	1.33	31	8.31	2498	2.58
55	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5363_1.02	(E2f8)_(Homo_sapiens)_(DBD_0.98)	TTTCCCGCCAAA	2.08e-7	1.44e-3	1.03e0	6930	373	373	96928	201	6	1.61	59	0.06
56	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M6384_1.02	(Nr1h4)_(Homo_sapiens)_(DBD_1.00)	AGGTCANTGACCYY	9.76e-8	1.80e-3	1.29e0	18469	373	373	96928	3.77	41	10.99	4244	4.38
57	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1923_1.02	Myb	TGRCAGTTDV	6.25e-8	1.84e-3	1.32e0	29415	373	373	96928	1.83	98	26.27	14998	15.47
58	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M2264_1.02	Atoh1	RCCAKCTG	7.04e-8	2.78e-3	1.99e0	39536	373	373	96928	1.45	168	45.04	30851	31.83
59	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0214_1.02	Tcf21	AACAKMTGK	1.57e-7	4.03e-3	2.90e0	25761	373	373	96928	2.28	88	23.59	13198	13.62
60	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M1950_1.02	(Zfp354c)_(Homo_sapiens)_(DBD_0.89)	GTGGAK	1.48e-7	8.29e-3	5.95e0	56130	373	373	96928	1.55	113	30.29	18500	19.09
61	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0414_1.02	Egr3	RCGTGGGYGD	1.64e-7	8.44e-3	6.06e0	51662	373	373	96928	1	247	66.22	51379	53.01
62	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M5116_1.02	(Atoh8)_(Drosophila_melanogaster)_(DBD_0.70)	RCCACCTGK	2.87e-7	1.34e-2	9.64e0	47141	373	373	96928	1.01	228	61.13	46584	48.06
63	/home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme	M0196_1.02	Npas2	NSCACGTGTN	9.24e-7	1.35e-2	9.72e0	14750	373	373	96928	5.14	14	3.75	699	0.72

# AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28
# The format of this file is described at http://meme-suite.org/doc/ame-output-format.html.
# ame --control ../gencode.vM4.annotation.TSS-500bp.fa -o AME-CISBP_Mus_musculus-gencode.vM4.annotation.TSS-500bp.DarkRedGenes ../gencode.vM4.annotation.TSS-500bp.DarkRedGenes.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme