rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1552_1.02 Sp110 NNNAGGGVN 4.44e-23 2.74e-18 1.96e-15 61645 185 185 96928 1.43 108 58.38 23437 24.18 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0406_1.02 Zbtb7b NNRGGGGKCN 6.27e-23 2.75e-18 1.97e-15 43759 185 185 96928 1.26 117 63.24 27419 28.29 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0404_1.02 Zfp202 NNNKGGGGSV 1.40e-20 7.19e-16 5.16e-13 51312 185 185 96928 1.19 130 70.27 35410 36.53 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0394_1.02 Plagl1 NDGGGGCCMN 1.50e-19 7.08e-15 5.08e-12 47291 185 185 96928 1.2 126 68.11 34259 35.34 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0429_1.02 Zfp740 NDKGGGGGGG 6.76e-19 2.95e-14 2.12e-11 43698 185 185 96928 1.37 122 65.95 32844 33.88 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6336_1.02 (Maz)_(Homo_sapiens)_(DBD_0.98) RGGGDRGGGAGGGRGGG 3.48e-17 2.37e-12 1.70e-9 68124 185 185 96928 5.36 131 70.81 38922 40.16 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0422_1.02 Zic5 SYRGGGGGTM 3.73e-16 1.57e-11 1.13e-8 42174 185 185 96928 1.23 107 57.84 28146 29.04 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0417_1.02 Egr1 NGMGKGGGYG 3.93e-16 1.97e-11 1.41e-8 50105 185 185 96928 1.01 148 80.00 49551 51.12 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0439_1.02 Zic2 CNCNGBRGGN 1.09e-15 4.71e-11 3.38e-8 43108 185 185 96928 1.26 67 36.22 12596 13.00 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6552_1.02 (Zfp148)_(Homo_sapiens)_(DBD_1.00) KGVGKGGGGGAGGGG 6.50e-15 3.99e-10 2.86e-7 61313 185 185 96928 2.38 143 77.30 47868 49.39 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0441_1.02 Zic3 CNCHGSRGGN 1.16e-14 5.00e-10 3.59e-7 43131 185 185 96928 1.21 71 38.38 14640 15.10 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0393_1.02 Glis2 NHGRGGGGTCN 3.81e-14 1.05e-9 7.53e-7 27547 185 185 96928 1.01 101 54.59 27220 28.08 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4640_1.02 (Zbtb7a)_(Homo_sapiens)_(DBD_1.00) GGGSRRGGGKCBSBG 1.69e-13 8.02e-9 5.76e-6 47445 185 185 96928 2.46 98 52.97 26476 27.32 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4599_1.02 (E2f6)_(Homo_sapiens)_(DBD_0.98) NRGGCGGGARR 1.67e-13 8.65e-9 6.21e-6 51794 185 185 96928 1.85 110 59.46 31999 33.01 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6420_1.02 (Plag1)_(Homo_sapiens)_(DBD_0.96) GGRGGSMHNWVKAGGGG 1.19e-12 5.85e-8 4.20e-5 49045 185 185 96928 1.29 129 69.73 42544 43.89 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6321_1.02 (Klf15)_(Homo_sapiens)_(DBD_1.00) RSMKGGGAGDKGGGGSS 2.03e-12 1.07e-7 7.72e-5 52918 185 185 96928 1.45 134 72.43 45543 46.99 17 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6482_1.02 (Sp3)_(Homo_sapiens)_(DBD_0.97) VGVVGGGGGCGGGGCBRGSS 3.63e-12 2.23e-7 1.60e-4 61445 185 185 96928 5.45 118 63.78 37353 38.54 18 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2391_1.02 (Klf5)_(Homo_sapiens)_(DBD_0.95) DGGGHGGGGC 1.36e-11 8.59e-7 6.17e-4 63051 185 185 96928 1.43 150 81.08 55943 57.72 19 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0412_1.02 Zic1 CNCMRCRGGN 2.31e-11 9.97e-7 7.16e-4 43253 185 185 96928 1.16 89 48.11 24554 25.33 20 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0812_1.02 Gcm1 NATRCGGGY 5.67e-11 1.60e-6 1.15e-3 28289 185 185 96928 2.19 6 3.24 28 0.03 21 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6123_1.02 Zfp281 GRGKTGGGGGAGGGG 5.32e-11 3.09e-6 2.22e-3 58091 185 185 96928 4.15 116 62.70 37686 38.88 22 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2314_1.02 (Sp2)_(Homo_sapiens)_(DBD_1.00) SSSVRGRGGCGGGRC 1.56e-10 9.19e-6 6.60e-3 58997 185 185 96928 2.11 132 71.35 46746 48.23 23 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0397_1.02 Zfp263 GGGAGSAC 4.23e-10 1.96e-5 1.41e-2 46371 185 185 96928 1.17 106 57.30 33801 34.87 24 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6325_1.02 (Klf6)_(Homo_sapiens)_(DBD_1.00) GGGGGCKG 1.21e-9 6.40e-5 4.60e-2 52855 185 185 96928 1.19 131 70.81 47369 48.87 25 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6267_1.02 (Glis3)_(Homo_sapiens)_(DBD_0.98) GYGGGGGGTM 2.80e-9 8.65e-5 6.21e-2 30914 185 185 96928 1.01 97 52.43 30487 31.45 26 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2271_1.02 E2f3 SDSYGVGGGCGGGAR 2.60e-9 1.08e-4 7.73e-2 41374 185 185 96928 2.2 88 47.57 26299 27.13 27 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0414_1.02 Egr3 RCGTGGGYGD 2.71e-9 1.23e-4 8.81e-2 45238 185 185 96928 1.1 116 62.70 39834 41.10 28 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0421_1.02 Klf8 NGGGYGKGKN 2.39e-9 1.36e-4 9.78e-2 57112 185 185 96928 1.04 142 76.76 54061 55.77 29 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0082_1.02 Tcfap2a HGCCBBVGGS 8.01e-9 3.73e-4 2.68e-1 46617 185 185 96928 1.52 83 44.86 24624 25.40 30 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5965_1.02 (Zic4)_(Homo_sapiens)_(DBD_0.97) DCDCMGCGGGGGGYC 2.23e-8 3.98e-4 2.86e-1 17875 185 185 96928 1.83 39 21.08 7752 8.00 31 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0084_1.02 Tcfap2c HSCCBSAGGS 1.58e-8 7.10e-4 5.10e-1 45001 185 185 96928 1.42 92 49.73 29077 30.00 32 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6553_1.02 (Zfp219)_(Homo_sapiens)_(DBD_1.00) GDGGGGGGYGGA 1.66e-8 7.80e-4 5.60e-1 46860 185 185 96928 19.4 15 8.11 1204 1.24 33 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6535_1.02 (Wt1)_(Homo_sapiens)_(DBD_0.99) GMGGGGGCGKGGG 2.59e-8 1.45e-3 1.04e0 56112 185 185 96928 2.17 118 63.78 42231 43.57 34 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5593_1.02 (Klf16)_(Homo_sapiens)_(DBD_0.92) GGGGGCGTGKC 4.30e-8 2.26e-3 1.62e0 52529 185 185 96928 1.12 132 71.35 50142 51.73 35 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2274_1.02 Egr2 GKGYGTGGGYGKRDS 1.38e-7 6.99e-3 5.02e0 50854 185 185 96928 1.02 131 70.81 50361 51.96 36 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0405_1.02 Klf7 DGGGCGKGGY 1.52e-7 7.63e-3 5.48e0 50339 185 185 96928 1.14 121 65.41 44968 46.39 37 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6201_1.02 (Egr4)_(Homo_sapiens)_(DBD_1.00) GGSGGYRGGGM 2.19e-7 1.00e-2 7.21e0 46192 185 185 96928 1.8 105 56.76 36936 38.11 # AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28 # The format of this file is described at http://meme-suite.org/doc/ame-output-format.html. # ame --control ../gencode.vM4.annotation.TSS-500bp.fa -o AME-CISBP_Mus_musculus-gencode.vM4.annotation.TSS-500bp.CyanGenes ../gencode.vM4.annotation.TSS-500bp.CyanGenes.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme