rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0422_1.02 Zic5 SYRGGGGGTM 1.63e-11 6.66e-7 4.78e-4 40971 93 93 96928 1.51 41 44.09 14446 14.90 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6123_1.02 Zfp281 GRGKTGGGGGAGGGG 1.49e-11 8.59e-7 6.17e-4 57665 93 93 96928 7.08 61 65.59 30487 31.45 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6321_1.02 (Klf15)_(Homo_sapiens)_(DBD_1.00) RSMKGGGAGDKGGGGSS 1.72e-11 9.00e-7 6.46e-4 52274 93 93 96928 2.92 61 65.59 30582 31.55 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6267_1.02 (Glis3)_(Homo_sapiens)_(DBD_0.98) GYGGGGGGTM 3.34e-11 1.00e-6 7.21e-4 30063 93 93 96928 2.06 32 34.41 9075 9.36 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0441_1.02 Zic3 CNCHGSRGGN 7.87e-10 3.31e-5 2.38e-2 42082 93 93 96928 1.14 47 50.54 20919 21.58 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6325_1.02 (Klf6)_(Homo_sapiens)_(DBD_1.00) GGGGGCKG 1.37e-9 7.15e-5 5.13e-2 52127 93 93 96928 1.11 75 80.65 48753 50.30 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2391_1.02 (Klf5)_(Homo_sapiens)_(DBD_0.95) DGGGHGGGGC 2.09e-9 1.31e-4 9.41e-2 62635 93 93 96928 3.19 64 68.82 36974 38.15 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0439_1.02 Zic2 CNCNGBRGGN 3.16e-9 1.33e-4 9.56e-2 42074 93 93 96928 1.15 48 51.61 22601 23.32 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0429_1.02 Zfp740 NDKGGGGGGG 3.32e-9 1.43e-4 1.02e-1 42910 93 93 96928 1.04 68 73.12 41540 42.86 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1552_1.02 Sp110 NNNAGGGVN 2.99e-9 1.83e-4 1.31e-1 61204 93 93 96928 1.42 48 51.61 22564 23.28 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0404_1.02 Zfp202 NNNKGGGGSV 1.41e-8 7.09e-4 5.09e-1 50453 93 93 96928 1.39 44 47.31 20322 20.97 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1419_1.02 Gm98 YSGTRCCABS 1.91e-7 7.65e-4 5.49e-1 4009 93 93 96928 1.31 4 4.30 47 0.05 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2314_1.02 (Sp2)_(Homo_sapiens)_(DBD_1.00) SSSVRGRGGCGGGRC 1.55e-8 9.11e-4 6.54e-1 58599 93 93 96928 4.32 59 63.44 33624 34.69 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0397_1.02 Zfp263 GGGAGSAC 4.11e-8 1.88e-3 1.35e0 45723 93 93 96928 1.71 34 36.56 13461 13.89 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4640_1.02 (Zbtb7a)_(Homo_sapiens)_(DBD_1.00) GGGSRRGGGKCBSBG 1.00e-7 4.67e-3 3.35e0 46719 93 93 96928 2.33 50 53.76 26781 27.63 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0406_1.02 Zbtb7b NNRGGGGKCN 1.48e-7 6.30e-3 4.52e0 42740 93 93 96928 1.26 49 52.69 26204 27.03 17 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0412_1.02 Zic1 CNCMRCRGGN 1.60e-7 6.75e-3 4.84e0 42210 93 93 96928 1.16 45 48.39 22827 23.55 18 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5980_1.02 (Zfp784)_(Homo_sapiens)_(DBD_0.98) AGGTAGGTAC 1.22e-6 1.36e-2 9.78e0 11234 93 93 96928 2.73 19 20.43 5556 5.73 # AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28 # The format of this file is described at http://meme-suite.org/doc/ame-output-format.html. # ame --control ../gencode.vM4.annotation.TSS-500bp.fa -o AME-CISBP_Mus_musculus-gencode.vM4.annotation.TSS-500bp.ChondroOsteoFinalgenes_Loose ../gencode.vM4.annotation.TSS-500bp.ChondroOsteoFinalgenes_Loose.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme